Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007301,929,9180AG71.7% 199.0 / 81.9 127intergenic (‑1001/‑167)USA300HOU_1794/USA300HOU_1796hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (17/19);  new base G (56/35);  total (73/54)
Fisher's exact test for biased strand distribution p-value = 1.66e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.75e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 128 total aligned reads displayed.

TGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAAT  >  CP000730/1929778‑1930055
                                                                                                                                                |                                                                                                                                          
tGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCa                                                                                                                                            <  1:423954/141‑1 (MQ=255)
    tgtgCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGc                                                                                                                                       <  1:367868/141‑1 (MQ=255)
    tgtgCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGc                                                                                                                                       <  1:724082/141‑1 (MQ=255)
    tgtgCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGc                                                                                                                                       <  1:342258/141‑1 (MQ=255)
    tatgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCg                                                                                                                                      <  1:259539/139‑1 (MQ=255)
      tgCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGt                                                                                                                                     >  1:593053/1‑141 (MQ=255)
      tgCTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGta                                                                                                                                    >  1:362093/1‑140 (MQ=255)
        cTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGtatt                                                                                                                                  >  1:486822/1‑138 (MQ=255)
        cTTGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGATAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGtatt                                                                                                                                  >  1:212596/1‑141 (MQ=255)
          tgtatattcacagatggtATCATAATAGAGTCGCCTATCTCTCAAGCGTCAATT‑‑GACGTAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGCGCTGT‑TGCGtattat                                                                                                                                >  1:562686/13‑139 (MQ=255)
          tGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGtattat                                                                                                                                <  1:927463/141‑6 (MQ=255)
          tGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGtattat                                                                                                                                <  1:927261/141‑6 (MQ=255)
          tGTATATTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGtattat                                                                                                                                <  1:49769/141‑6 (MQ=255)
           gtatattcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGtattata                                                                                                                               >  1:808288/12‑138 (MQ=255)
           gTATATTTGCCGATGCTATAATAGGAGAGTCGCCTATCTCGCAGGCGGCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTGCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGtttttt                                                                                                                                <  1:28385/141‑1 (MQ=255)
            tataTTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGCGGAGGTGCATTAC‑T‑T‑TGCTAATCAATTTCGTTCACATCATAGCACCAGTCCTCAGTGGTTGTGCTGT‑TGCGtattatac                                                                                                                              <  1:600291/141‑8 (MQ=255)
            tataTTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGtattatac                                                                                                                              <  1:390988/141‑8 (MQ=255)
            tataTTCACAGATGGTATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGtattatac                                                                                                                              <  1:243654/141‑8 (MQ=255)
                ttcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTAt                                                                                                                          >  1:381859/7‑141 (MQ=255)
                 tcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTAtt                                                                                                                         >  1:312953/6‑141 (MQ=255)
                 tcacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGC‑TGCGTATTATACTTAtt                                                                                                                         >  1:118684/6‑141 (MQ=255)
                  cacagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑CTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTg                                                                                                                        >  1:340588/5‑141 (MQ=255)
                   acagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTgg                                                                                                                       <  1:272184/138‑1 (MQ=255)
                    cagatggtATAATAATAGAGTCGCGTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGc                                                                                                                      >  1:676862/3‑141 (MQ=255)
                    cagatggtATAATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGc                                                                                                                      >  1:851500/3‑141 (MQ=255)
                      gatgatATAAGAGTAGCGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCt                                                                                                                     <  1:710638/141‑1 (MQ=255)
                        tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCttag                                                                                                                  <  1:652955/138‑4 (MQ=255)
                        tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCttag                                                                                                                  <  1:791581/138‑4 (MQ=255)
                        tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAg                                                                                                                  >  1:897533/4‑141 (MQ=255)
                        tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAg                                                                                                                  >  1:890406/4‑141 (MQ=255)
                        tggtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAg                                                                                                                  >  1:434614/4‑141 (MQ=255)
                        tggtataATAATAGAGTCGCCTATCTCTAAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑C‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCttag                                                                                                                  <  1:20763/138‑4 (MQ=255)
                          gtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTa                                                                                                                >  1:522451/2‑141 (MQ=255)
                          gtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTa                                                                                                                >  1:903382/2‑141 (MQ=255)
                          gtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTa                                                                                                                >  1:457220/2‑141 (MQ=255)
                          gtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTAGTTAAGAACTTAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTa                                                                                                                >  1:674037/2‑141 (MQ=255)
                          gtataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑CTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTa                                                                                                                >  1:522067/2‑141 (MQ=255)
                           tataATAATAGAGTCGCCTGTCTCTCAGGCGTCAA‑‑TCGACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTaa                                                                                                               >  1:492704/1‑140 (MQ=255)
                           tataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTaa                                                                                                               >  1:801580/1‑140 (MQ=255)
                           tataATAATAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑CTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTaa                                                                                                               >  1:745403/1‑140 (MQ=255)
                            ataataataGAGTTGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTaaa                                                                                                              <  1:734922/141‑3 (MQ=255)
                            ataataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTaaa                                                                                                              >  1:218836/1‑139 (MQ=255)
                            ataataataGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑C‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCCTCAGTGCCCGTGCTGT‑TGCGTATTATACTTATTGGCttactaaa                                                                                                              >  1:253075/1‑134 (MQ=255)
                            agaataatAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTaaa                                                                                                              <  1:322338/139‑3 (MQ=255)
                             taataaTAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTaaac                                                                                                             <  1:542973/141‑4 (MQ=255)
                             taataaTAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTaaac                                                                                                             <  1:904626/141‑4 (MQ=255)
                             taataaTAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTaaac                                                                                                             <  1:92418/141‑4 (MQ=255)
                             taataaTAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTaaac                                                                                                             <  1:389641/141‑4 (MQ=255)
                             taataaTAGAGTCGCCTACCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTaaac                                                                                                             <  1:782190/141‑4 (MQ=255)
                             aaataatAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTaaac                                                                                                             <  1:543048/140‑4 (MQ=255)
                              aataatAGAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACg                                                                                                            <  1:105053/141‑1 (MQ=255)
                                   tagAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaaca                                                                                                       <  1:273389/141‑3 (MQ=255)
                                    agagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTGATCGGTGGCTGTGCTGT‑TGCGTAATATACTTATTGGCTTAGTAAACGGaacca                                                                                                      >  1:102543/1‑138 (MQ=255)
                                     gagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATACGAGGATCT‑CGATGTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaa                                                                                                     >  1:628115/1‑137 (MQ=255)
                                      agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaat                                                                                                    <  1:259167/141‑6 (MQ=255)
                                      agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAA‑T‑T‑TGCTAATCCTTCTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaat                                                                                                    >  1:183951/1‑136 (MQ=255)
                                      agTCGCCTATCTCTCAGGCGACAATTTACACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGCTGCTTATTTTCGTTCACATCATAGAACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACa                                                                                                     >  1:599856/1‑141 (MQ=255)
                                        tCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataa                                                                                                  >  1:306349/1‑134 (MQ=255)
                                          gCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatt                                                                                                <  1:909744/141‑10 (MQ=255)
                                          gCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatt                                                                                                >  1:750229/1‑132 (MQ=255)
                                          gCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatt                                                                                                >  1:908762/1‑132 (MQ=255)
                                          gCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGCCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatt                                                                                                <  1:849069/141‑10 (MQ=255)
                                           ccTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatta                                                                                               >  1:333302/1‑131 (MQ=255)
                                             tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATCCTTATTGGCTTAGTAAACGCaacaaataattaat                                                                                             >  1:70653/1‑129 (MQ=255)
                                             tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat                                                                                             >  1:568448/1‑129 (MQ=255)
                                             tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat                                                                                             >  1:135159/1‑129 (MQ=255)
                                             tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATAATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTCGTAGACTCaacagatgattaat                                                                                             >  1:321202/1‑129 (MQ=255)
                                             tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTA‑C‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat                                                                                             >  1:74751/1‑129 (MQ=255)
                                             tATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAAGTGCATTAC‑T‑T‑TGCTAATCATTTTAGTTCACATCATAGCACCAGTCACCCGTGGCTATGTTGT‑GGCGTATTTTACTTATTGGCTTAGTCAACGCaacaaataattaat                                                                                             >  1:210941/1‑129 (MQ=255)
                                              aTCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGt                                                                                             >  1:611181/1‑141 (MQ=255)
                                              aTCTCTCAGGCGTCAATT‑‑GACGAGGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                                                                            >  1:775889/1‑128 (MQ=255)
                                              aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTCGTAAACCCaacaaataattaata                                                                                            >  1:234487/1‑128 (MQ=255)
                                              aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                                                                            <  1:667681/141‑14 (MQ=255)
                                              aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                                                                            >  1:606846/1‑128 (MQ=255)
                                              aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                                                                            >  1:740294/1‑128 (MQ=255)
                                              aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                                                                            >  1:245740/1‑128 (MQ=255)
                                              aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                                                                            >  1:408851/1‑128 (MQ=255)
                                              aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                                                                            >  1:747941/1‑128 (MQ=255)
                                              aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                                                                            >  1:854406/1‑128 (MQ=255)
                                              aTCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                                                                                            >  1:731859/1‑128 (MQ=255)
                                               tctctcAGGCGTCAATT‑‑GACGAAGAGAGGAGGTGCATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGT‑TGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaatag                                                                                           >  1:794522/1‑127 (MQ=255)
                                                 tctcAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCGTAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTCTTGGCTAAGGAGACGCAATACAAAATAgaggac                                                                                          >  1:33226/1‑136 (MQ=255)
                                                     aGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACatat                                                                                      >  1:331022/1‑141 (MQ=255)
                                                       gCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAg                                                                                    <  1:849353/141‑1 (MQ=255)
                                                             aTTTAGACGCGGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCAc                                                                              >  1:228735/1‑141 (MQ=255)
                                                                  gACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTCTCTTATTGGCTAAGTAGACGCAATACAAAAGAGGTGACATATAGCCGCACCAATa                                                                         <  1:677712/141‑1 (MQ=255)
                                                                              aggTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCa                                                             >  1:104774/1‑141 (MQ=255)
                                                                                                   cTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAg                                            <  1:841347/141‑1 (MQ=255)
                                                                                                         ttCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGAtt                                      <  1:298425/141‑1 (MQ=255)
                                                                                                           cGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATggg                                    >  1:310182/1‑141 (MQ=255)
                                                                                                           cGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGGGAGGGGATTgg                                    >  1:875384/1‑141 (MQ=255)
                                                                                                                   tcatAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAg                            >  1:611070/1‑141 (MQ=255)
                                                                                                                     atAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTGGGCGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTa                          >  1:487725/1‑141 (MQ=255)
                                                                                                                     atAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTa                          >  1:696419/1‑141 (MQ=255)
                                                                                                                      tAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTaa                         >  1:39588/1‑141 (MQ=255)
                                                                                                                           ccAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTTGTGTATAAGTAAATACt                    <  1:640682/141‑1 (MQ=255)
                                                                                                                               tcatcaGTGGCTGGGCCAT‑TGCGTTTTTTTCTTCTTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTAtt                <  1:23824/141‑1 (MQ=255)
                                                                                                                                catcaGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCCATAAAAATCCCCTCACTACCGCACATACGGGGGGGATTGGTGTTTAAGTAAATGCtttttt               >  1:5913/1‑141 (MQ=255)
                                                                                                                                         gtgtgCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCt      <  1:518304/140‑1 (MQ=255)
                                                                                                                                             gCCAT‑GGGGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAAt  <  1:342749/141‑1 (MQ=255)
                                                                                                                                                |                                                                                                                                          
TGACTGTGCTTGTATATTTGCCGATGATATAATAGTAGAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT‑TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGGATTGGTGTATAAGTAAATACTTATTTTCGTTGTCTTAAT  >  CP000730/1929778‑1930055

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑