New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 80092829 (0.960)3 (0.110) 3/246 NT 10.1% intergenic (+62/‑289) hisC1/USA300HOU_0748 histidinol‑phosphate transaminase/hypothetical protein
?CP000730 801948 = 26 (0.910)intergenic (+189/+435) USA300HOU_0748/dgkA1 hypothetical protein/possible diacylglycerol kinase

AAGTAATTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATC  >  CP000730/801810‑802085
                                                                                                                                          |                                                                                                                                         
aaGTAATTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGAAAGTTGGGGTGGGCCCCAACATa                                                                                                                                         <  2:246767/141‑1 (MQ=255)
                        tttATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAAt                                                                                                                 <  1:74492/141‑1 (MQ=255)
                            tGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTGGAAATTAGt                                                                                                             >  2:262970/1‑141 (MQ=255)
                               aatgataaaatgttagaagttttatcaaactttaaatacgaatagtaagtggggagtgggacagaaatgatactttcgcaaaatttatttcgtcgtcccaccccaacATAAAGAAATACTTTTTCTTTAGAAATTAGTAtt                                                                                                          <  2:216013‑M2/34‑1 (MQ=255)
                                  gataaaatgttagaagttttatcaaactttaaatacgaatagtaagtggggagtggtacagaaatgatactttcgcaaaatttatttcgtcgtcccaccccaacATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCt                                                                                                       <  2:205135‑M2/37‑1 (MQ=255)
                                            acacTATATTTGCAGTAGTTTACTTCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGCTAATTTTATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTTTGCATGAg                                                                                             >  1:235013/1‑141 (MQ=14)
                                              attgtatTGGCAGTAGTTGACTGCGGGGCCCAAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAgtg                                                                                           <  2:283770/137‑1 (MQ=255)
                                              acTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAgtg                                                                                           <  2:76215/141‑1 (MQ=255)
                                                 atatTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTTTGCATGAGTGTaa                                                                                        >  2:90467/1‑141 (MQ=255)
                                                    ttatcaaactttaaatacgaatagtaagtggggagtgggacagaaatgatactttcgcaaaatttatttcgtcgtcccaccccaacATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTc                                                                                     <  2:292847‑M2/55‑1 (MQ=255)
                                                             gtTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCa                                                                            <  1:50849/141‑1 (MQ=255)
                                                             gtTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCGTATGCATGAGTGTAACTCATGCATTCa                                                                            <  1:342891/141‑1 (MQ=255)
                                                                gACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCatat                                                                         >  1:237416/1‑141 (MQ=255)
                                                                gACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCatat                                                                         >  1:4007/1‑141 (MQ=255)
                                                                 aCTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCTAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTTatata                                                                        >  2:210225/1‑140 (MQ=255)
                                                                            ccAACATAGAGAAATTGGAACGCCAATTTCTGCAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGCAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTacac                                                             >  2:90087/1‑141 (MQ=255)
                                                                            ccAACATAGAGAAATTGGAACGCCAATTTCTACAGCCAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTCTTTCTTATGCCTGAGTGTAACACATGCATTCATCTTTTTAAGTagac                                                             >  2:90071/1‑141 (MQ=17)
                                                                                  tAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGc                                                       <  2:33225/141‑1 (MQ=255)
                                                                                      aaaaTTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCtgtg                                                   <  2:220102/140‑1 (MQ=255)
                                                                                             gAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATg                                            >  1:156816/1‑141 (MQ=255)
                                                                                              aaCGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGa                                           >  1:155663/1‑141 (MQ=255)
                                                                                              aaCGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGa                                           >  1:162452/1‑141 (MQ=255)
                                                                                               aCGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGAt                                          >  1:142923/1‑141 (MQ=255)
                                                                                                        tCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGCAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCGTTCATATTTTTAAGTACACGTTAGCTTTGACTATTGATAAAGagtgg                                 >  2:44211/1‑137 (MQ=18)
                                                                                                            cAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTAc                             <  2:231017/141‑1 (MQ=255)
                                                                                                            cAGACAATGCAAGTTGAGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTAc                             <  2:204826/141‑1 (MQ=255)
                                                                                                              gACTATGTAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTATTATTTCTTACGCATGAGTGTAACTCATGCATTCATCTTTTTAAGTACACATTAGCTGTGACTAATGATAAAGCATCGCTACAt                           <  2:285083/141‑1 (MQ=18)
                                                                                                                   tGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACAGaatca                      >  2:251421/1‑141 (MQ=255)
                                                                                                                       aGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGACATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACTCATTAGCTGTGACTCATGATAAAGAATCGCTAACTAatcaatca                  >  1:28802/1‑141 (MQ=18)
                                                                                                                             ggTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTACTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTc            >  1:293311/1‑141 (MQ=255)
                                                                                                                               tGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGt          >  1:293361/1‑141 (MQ=255)
                                                                                                                                       aacATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCGTTAGTCGTTGTTTATc  >  1:308805‑M2/4‑141 (MQ=255)
                                                                                                                                          |                                                                                                                                         
AAGTAATTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATC  >  CP000730/801810‑802085

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.