New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	559607 =	NA (NA)	3 (0.110) +A	3/268	4.2	9.7%	noncoding (651/2921 nt)	rrl2	23S ribosomal RNA
	?	CP000730	683996 =	28 (1.020)					coding (327/1047 nt)	USA300HOU_0628	hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACGACCAAATACTAAACGCCCTATTCAGACTCGCTTTCGCTACGGCTCCACATTTACTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/559666‑559607 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCAATAATGGCCATAAAAATATTCACAGGTACTTTATTTTTTTCTGCAATTTTCTGTATTTCTTTTCCTTTACCCTCTAATTTTCCACCTTTAGCATTTTCGTTAAACTTATCAATACCATTTGCCGAAACA  >  CP000730/683996‑684128                                                             |                                                                                                                                      ACGACCAAATACTAAACGCCCTATTCAGACTCGCTTTCGCTACGGCTCCACATTTACTGCACGCAATAATGGCCATAAAAATATTCACAGGTACTTTATTTTTTTCTGCAATTTTCTGTATTTCT                                                                       >  1:119878/1‑125 ACGACCAAATACTAAACGCCCTATTCAGACTCGCTTTCGCTACGGCTCCACATTTACTGCACGCAATAATGGCCATAAAAATATTCACAGGTACTTTATTTTTTTCTGCAATTTTCTGTATTTCT                                                                       <  2:119878/125‑1                                                      tcctTGCACGCAATAATGGCCATAAAAATATTCACAGGTACTTTATTTTTTTCTGCAATTTTCTGTATTTCTTTTCCTTTACCCTCTAATTTTCCACCTTTAGCATTTTCGTTAAACTTATCAATACCATTTGCCGAAACA  <  1:36515/137‑1                                                             |                                                                                                                                      ACGACCAAATACTAAACGCCCTATTCAGACTCGCTTTCGCTACGGCTCCACATTTACTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/559666‑559607 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCAATAATGGCCATAAAAATATTCACAGGTACTTTATTTTTTTCTGCAATTTTCTGTATTTCTTTTCCTTTACCCTCTAATTTTCCACCTTTAGCATTTTCGTTAAACTTATCAATACCATTTGCCGAAACA  >  CP000730/683996‑684128

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.