New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	298069 =	41 (1.500)	3 (0.120)	3/250	4.0	7.0%	intergenic (+208/‑220)	tagB1/tagF	glycosyl/glycerophosphate transferase/CDP‑glycerol glycerophosphotransferase
	?	CP000730	298125 =	42 (1.660)					intergenic (+264/‑164)	tagB1/tagF	glycosyl/glycerophosphate transferase/CDP‑glycerol glycerophosphotransferase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGAGCAACATGTCATGATGAGAAGCAGGACTATACAATGAGAATAACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGTATGATAATTAACGACAAGTGTAATGGTTAAATGTATTTTAT  >  CP000730/297934‑298205                                                                                                                                        |                                                                                                                                         tGAGCAACATGTCATGATGAGAAGCAGGACTATACAATGAGAATAACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGt                                                                                                                                     >  1:7409/1‑141 (MQ=255)       aCATGTCATGATGAGAAGCAGGACTATACAATGAGAATAACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTa                                                                                                                               >  2:259807/1‑141 (MQ=255)                       aGCAGGACTATACAATGAGAATAACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATCGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTaa                                                                                                               >  1:126355/1‑141 (MQ=255)                         cAGGACTATACAATGAGAATAACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAac                                                                                                             <  1:289760/141‑1 (MQ=255)                                     aTGAGAATAACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGGAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATg                                                                                                 <  2:39147/141‑1 (MQ=255)                                     aTGAGAATAACCTTTTGATTTTTCATGCATAAGGCGATTCAAACAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATg                                                                                                 <  1:2733/141‑1 (MQ=255)                                          aaTAACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATgg                                                                                            >  1:120071/1‑141 (MQ=255)                                          aaTAACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATgg                                                                                            <  1:217348/141‑1 (MQ=255)                                               ccTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATaaa                                                                                       >  2:88126/1‑140 (MQ=255)                                                          ttCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTtgtt                                                                            >  1:267867/1‑141 (MQ=255)                                                           tcattcatAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTtgtta                                                                           >  2:121920/1‑141 (MQ=255)                                                           tCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTtgtta                                                                           <  1:84614/141‑1 (MQ=255)                                                            cATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTtgttat                                                                          <  2:194543/141‑1 (MQ=255)                                                              tGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTtgttatgt                                                                        <  2:250531/141‑1 (MQ=255)                                                               gcgtAAGGCGATTCAATCAAAAGCGATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAAGCGATCCAATCGTTATCTAATTCATAAATGTGGAAACACAGACGTTATGAATGGATAACGATGTGTtgttatgtt                                                                       >  2:309/4‑141 (MQ=255)                                                               gCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTtgttatgtt                                                                       >  2:198536/1‑141 (MQ=255)                                                                 aTAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTATAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTaa                                                                     <  1:87372/141‑1 (MQ=255)                                                                   aaGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAg                                                                   <  1:130982/141‑1 (MQ=255)                                                                       cGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGt                                                               <  1:262088/141‑1 (MQ=255)                                                                            caatcaaAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACAtt                                                          >  1:195956/1‑141 (MQ=255)                                                                            caatcaaAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGAGAACGATTTGTTGTTATGTTAAAGTGGTACAtt                                                          >  2:73951/1‑141 (MQ=255)                                                                               tcaaAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAAt                                                       >  1:104124/1‑141 (MQ=255)                                                                                   aaGGAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGCTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATg                                                   >  2:260576/1‑141 (MQ=255)                                                                                         tCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTc                                             <  1:177776/141‑1 (MQ=255)                                                                                             cTTCCAACTGAATTGTCAATTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGTAt                                         <  1:2611/141‑1 (MQ=255)                                                                                              ttCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGTATg                                        <  2:160648/141‑1 (MQ=255)                                                                                                   aCTGAATTGTCATTTTTTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGTATGATAAt                                   <  1:170362/141‑1 (MQ=255)                                                                                                   aCTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGTATGATAAt                                   >  1:267880/1‑141 (MQ=255)                                                                                                         ttGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGTATGATAATTAACGa                             <  2:143292/141‑1 (MQ=255)                                                                                                            tCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTTTTATGTTAAATTGGTACATTAATCATGTATTTCGTATGATAATTAACGACaa                          >  2:88404/1‑141 (MQ=255)                                                                                                                 ttGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGTATGATAATTAACGACAAGTGTa                     <  2:126355/141‑1 (MQ=255)                                                                                                                     aaaataaaatAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGTATGATAATTa                                 >  2:20853/1‑125 (MQ=255)                                                                                                                     aaaataaaatAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGTATGATAATTa                                 <  1:20853/125‑1 (MQ=255)                                                                                                                      aaataaaataATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTTTTATTTTTATTTTTTACATTAATCATGTTTTTCTTATGATAATTAAATATAAGTTTAATAGt                >  2:99757/1‑141 (MQ=255)                                                                                                                      aaataaaataATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGTATGATAATTAACGACAAGTGTAATGGt                <  2:195956/141‑1 (MQ=255)                                                                                                                        ataaaataaTCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGTATGATAATTAACGACAAGTGTAATGGTTa              >  2:234265/1‑141 (MQ=255)                                                                                                                             ataatCGATCCAATCGTTATTTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATGATGTATTTCATATGATAATTAACGACAAGTGTAATGGTTAAATGt         >  2:226411/1‑141 (MQ=255)                                                                                                                             ataatCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGTATGATAATTAACGACAAGTGTAATGGTTAAATGt         >  2:39823/1‑141 (MQ=255)                                                                                                                               aatCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGTATGATAATTAACGACAAGTGTAATGGTTAAATGTAt       <  1:206835/141‑1 (MQ=255)                                                                                                                                   gATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGTATGATAATTAACGACAAGTGTAATGGTTAAATGTATTTTa   >  1:250143/1‑141 (MQ=255)                                                                                                                                    aTCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGTATGATAATTAACGACAAGTGTAATGGTTAAATGTATTTTat  >  1:188239/1‑141 (MQ=255)                                                                                                                                        |                                                                                                                                         TGAGCAACATGTCATGATGAGAAGCAGGACTATACAATGAGAATAACCTTTTGATTTTTCATGCATAAGGCGATTCAATCAAAAGCAATCACCTTCCAACTGAATTGTCATTTTGTAAAATAAAATAATCGATCCAATCGTTATCTAATTCATAAATGTGTAAACACATACGTTATGAATGGATAACGATTTTTTGTTATGTTAAAGTGGTACATTAATCATGTATTTCGTATGATAATTAACGACAAGTGTAATGGTTAAATGTATTTTAT  >  CP000730/297934‑298205

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.