New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	365029 =	29 (1.060)	4 (0.160)	4/246	3.4	13.0%	intergenic (+39/+66)	nupC/USA300HOU_0334	possible CNT family concentrative nucleoside transporter/SSS family solute:sodium (Na+) symporter
	?	CP000730	365083 =	27 (1.080)					intergenic (+93/+12)	nupC/USA300HOU_0334	possible CNT family concentrative nucleoside transporter/SSS family solute:sodium (Na+) symporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGACAATGAAGCTAAGTATATAAGCAAAGACAAAAG  >  CP000730/364947‑365222                                                                                                                                         |                                                                                                                                            tAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCa                                                                                                                                         <  2:118253/141‑1 (MQ=255)   gCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATa                                                                                                                                       >  1:26449/1‑141 (MQ=255)         aTCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATc                                                                                                                                 <  2:132755/141‑1 (MQ=255)         aTCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATc                                                                                                                                 <  1:67141/141‑1 (MQ=255)            aTTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTAc                                                                                                                              <  2:200520/141‑1 (MQ=255)              ttCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACtt                                                                                                                            >  1:160357/1‑141 (MQ=255)                cAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACtttt                                                                                                                          <  2:12532/141‑1 (MQ=255)                   gATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCg                                                                                                                       <  2:223951/141‑1 (MQ=255)                      caatcaTTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAg                                                                                                                    >  2:142571/1‑141 (MQ=255)                      caatcaTTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAg                                                                                                                    >  2:188632/1‑141 (MQ=255)                         tcaTTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCg                                                                                                                 >  2:250489/1‑141 (MQ=255)                                    gTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatg                                                                                                      <  1:200711/141‑1 (MQ=255)                                        tGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgtatg                                                                                                  >  2:249331/1‑141 (MQ=255)                                                      attACCTAAAGTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGAGTTTGATCAGAACAATCTACTTTTTCGTAGCCGTGTTTTAAATGTATTTTGATGTTTTATCt                                                                                    <  2:179903/139‑1 (MQ=255)                                                      aGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGttttatc                                                                                    >  1:70149/1‑137 (MQ=255)                                                            taaattaaatTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCa                                                                              <  2:160357/141‑1 (MQ=255)                                                                       cATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTaa                                                                   <  1:250489/141‑1 (MQ=255)                                                                       cATGGCAAAGCTAAACCCCATCACCAAGTTGGCGCAACAGCGCATCATAACTTGGTGATGGGATTTTATCATAACAATCTACTTATTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTAAAAAATTGTTaa                                                                   >  2:249403/1‑141 (MQ=255)                                                                                   aaaCCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATc                                                       >  1:239217/1‑141 (MQ=255)                                                                                           tCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTAt                                               <  2:104234/141‑1 (MQ=255)                                                                                                     ggCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTAAAATATTAAAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAgg                                     <  2:298865/141‑1 (MQ=255)                                                                                                          aaCAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGACaa                                <  1:142571/141‑1 (MQ=255)                                                                                                                  atcatAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTAAATTTTAAAAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGACAATGAAGCTa                        <  2:188511/141‑1 (MQ=255)                                                                                                                   tcatAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGACAATGAAGCTaa                       >  1:183586/1‑141 (MQ=255)                                                                                                                       aaCTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGACAATGAAGCTAAGtat                   <  1:235056/141‑1 (MQ=255)                                                                                                                         cTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGACAATGAAGCTAAGtatat                 <  2:174536/141‑1 (MQ=255)                                                                                                                            aGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTATATCTTTTTCAAAAATTGTTAAACCCGTTATATCTTTTTTATGTTTTGGAGGGAAAATGAAGCTAAGTATATAAg              >  1:101602/1‑141 (MQ=255)                                                                                                                             gTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGACAATGaa                            <  1:300893/126‑1 (MQ=255)                                                                                                                             gTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGACAATGaa                            >  2:300893/1‑126 (MQ=255)                                                                                                                               gACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGACAATGAAGCTAAGTATATAAGCaa           >  1:65721/1‑141 (MQ=255)                                                                                                                                        ttATCATAACAATCTACTTTTTCGTAGCCGTTTTTTAAATTTATGTTGATGGTTTATCTTTTTCAAAATTTTTTAATCCCGTTATATCTTTTTTATTTTTTGATTTCACAATGAAGCTAATTATATATGCAAAAACaaacg  >  2:162807/1‑139 (MQ=255)                                                                                                                                         |                                                                                                                                            TAGCTTCAATCATTTCAGGATCAATCATTGGCTTAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGACAATGAAGCTAAGTATATAAGCAAAGACAAAAG  >  CP000730/364947‑365222

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.