| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 329202 = | 83 (1.310) | 6 (0.100) | 6/252 | 8.5 | 7.7% | intergenic (+70/+73) | USA300HOU_0295/USA300HOU_0296 | hypothetical membrane protein/hypothetical protein |
| ? | CP000730 | 329255 = | 66 (1.120) | intergenic (+123/+20) | USA300HOU_0295/USA300HOU_0296 | hypothetical membrane protein/hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTGGATTGGTGAATATATCGTTTCATCAAGAACCATCTCTGCTTCAGAAGTTTCATCATATAATTACATCCATTAAATTAATCATGACATCAATAAAAAGCGACCAGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/329350‑329202‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggtcgctttTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGATATATTCACCAATCCAGTTCATTTCTGAAATTAGAATACTTCCATCAATATTAACTT > CP000730/329255‑329390 CTGGATTGGTGAATATATCGTTTCATCAAGAACCATCTCTGCTTCAGAAGTTTCATCATATAATTACATCCATTAAATTAATCATGACATCAATAAAAAGCGACCAGTTCGCAGTTTACAATTCGTAACACTGCAAAATTG > 1:59424/1‑141 TTGGTGAATATATCGTTTCATCAAGAACCATCTCTGCTTCAGAAGTTTCATCATATAATTACATCCATTAAATTAATCATGACATCAATAAAAAGCGACCAGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGC > 1:349004/1‑141 gtTGAATATATCGTTTCATCAAGAACCATCTCTGCTTCAGAAGTTTCATCATATAATTACATCCATTAAATTAATCATGACATCAATAAAAAGCGACCAGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTT < 1:375404/139‑1 GTGAATATATCGTTTCATCAAGAACCATCTCTGCTTCAGAAGTTTCATCATATAATTACATCCATTAAATTAATCATGACATCAATAAAAAGCGACCAGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTT < 1:423965/141‑1 ATCATGACATCAATAAAAAGCGACCAGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGAT > 1:597851/1‑141 GCGACCAGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGATATATTCACCAA > 1:629354/1‑141 CCAGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTTATTTTGTATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGATATATTCACCAATCC < 2:40074/141‑1 AGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGATATATTCACCAATCCAGT > 2:99734/1‑141 GTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTACTTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATG < 2:604805/116‑1 GTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATG > 1:604805/1‑116 TGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGATATATTCACCAATCCAGTTCATTTCTGAAATTAGAATACTTCCATCAATATT < 1:62718/141‑1 TGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGATATATTCACCAATCCAGTTCATTTCTGAAATTAGAATACTTCCATCAATATT < 1:223666/141‑1 TCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGATATATTCACCAATCCAGTTCATTTCTGAAATTAGAATACTTCCATCAATATTAAC > 2:6525/1‑141 GCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGATATATTCACCAATCCAGTTCATTTCTGAAATTAGAATACTTCCATCAATATTAACTT < 1:474349/141‑1 GCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGATATATTCACCAATCCAGTTCATTTCTGAAATTAGAATACTTCCATCAATATTAACTT < 2:74909/141‑1 CTGGATTGGTGAATATATCGTTTCATCAAGAACCATCTCTGCTTCAGAAGTTTCATCATATAATTACATCCATTAAATTAATCATGACATCAATAAAAAGCGACCAGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/329350‑329202‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggtcgctttTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGATATATTCACCAATCCAGTTCATTTCTGAAATTAGAATACTTCCATCAATATTAACTT > CP000730/329255‑329390 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |