| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 365029 = | 72 (1.130) | 8 (0.140) | 7/248 | 7.9 | 10.2% | intergenic (+39/+66) | nupC/USA300HOU_0334 | possible CNT family concentrative nucleoside transporter/SSS family solute:sodium (Na+) symporter |
| ? | CP000730 | 365083 = | 75 (1.300) | intergenic (+93/+12) | nupC/USA300HOU_0334 | possible CNT family concentrative nucleoside transporter/SSS family solute:sodium (Na+) symporter | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AACATAAAAAAGATATAACGGGATTAACAATTTTTGAAAAAGATAAACCATCAACATACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/365180‑365029‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgacggggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTC‑AAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGACAATGAAGCTAAGTATATAAGCAAAGACAAAAG > CP000730/365083‑365222 AACATAAAAGAGATCAAACGGGATAAAAAATTTTTGCAAAACATAAACCATCAACATACATTTCAAAAACGGCTACGAAAACGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGACACCTTGG < 2:301733/141‑1AACATAAAAAAGATATAACGGGATTAACAATTTTTGAAAAAGATAAACCATCAACATACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGG > 2:109608/1‑141 ATAAAAAAGATATAACGGGATTAACAATTTTTGAAAAAGATAAACCATCAACATACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGA > 1:333480/1‑141 TAAAAAAGATATAACGGGATTAACAATTTTTGAAAAAGATAAACCATCAACATACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGAC < 2:509455/141‑1 GATATACCGGGATTAACAATTTTTGAAAAAGATAAACCATCATCATACATTTAAAAAAAAAAAACAAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTT < 2:671478/141‑1 GATATAACGGGATTAACAATTTTTGAAAAAGATAAACCATCAACATACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTT < 2:480841/141‑1 GATATAACGGGATTAACAATTTTTGAAAAAGATAAACCATCAACATACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTT > 1:96918/1‑141 TTGAAAAAGATAAACCATCAACATACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACG < 2:332824/113‑1 TTGAAAAAGATAAACCATCAACATACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACG > 1:332824/1‑113 GATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTC‑AAAAATTGTTA > 2:208475/1‑141 CCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTC‑AAAAATTGTTAA < 2:433685/125‑1 CCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTC‑AAAAATTGTTAA > 1:433685/1‑125 CTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTC‑AAAAATTGTTAATCCCGTTATATCTTTTTTATGTT > 1:684075/1‑141 ATGCGCTGTTGCGCCAACTTGGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTC‑AAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGAC > 2:237689/1‑141 TGTTGCGCCAACTTGGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTC‑AAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGACAATGAA > 1:326274/1‑141 TGTTGCGCCAACTTGGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTC‑AAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGACAATGAA > 1:326269/1‑141 AACTTGGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTC‑AAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGACAATGAAGCTAAGTAT < 1:208475/141‑1 GTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTC‑AAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGACAATGAAGCTAAGTATATAAGC < 1:69175/141‑1 TGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTC‑AAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGACAATGAAGCTAAGTATATAAGCA < 2:581685/141‑1 TGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTC‑AAAAATTGTTAATCCCGTTATAGCTTTTTTATGTTTTGAAGGGACAATGAAGCTAAGTATATAAGCA < 1:71780/141‑1 GGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGACAATGAAGCTAAGTATATAAGCAAAGA < 2:493575/141‑1 TTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTC‑AAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGACAATGAAGCTAAGTATATAAGCAAAGACAAAAG < 1:645893/141‑1 AACATAAAAAAGATATAACGGGATTAACAATTTTTGAAAAAGATAAACCATCAACATACATTTCAAAAACGGCTACGAAAAAGTAGATTGTTATGATAAAACCCCGTCACTAAGTTATGATGCGCTGTTGCGCCAACTTGGTGACGGGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/365180‑365029‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgacggggtttTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTC‑AAAAATTGTTAATCCCGTTATATCTTTTTTATGTTTTGAAGGGACAATGAAGCTAAGTATATAAGCAAAGACAAAAG > CP000730/365083‑365222 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |