| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 2476453 | 44 (0.690) | 3 (0.050) | 3/248 | 10.4 | 7.3% | intergenic (‑198/+42) | tcaA/tcaR | teicoplanin resistance protein TcaA/transcriptional regulator TcaR |
| ? | CP000730 | = 2476476 | 36 (0.620) | intergenic (‑221/+19) | tcaA/tcaR | teicoplanin resistance protein TcaA/transcriptional regulator TcaR | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AAAATTATTTCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2476304‑2476453‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaggtgttcaaATATAAGACTAAATATGTATGTATTGAACACCTTCTTTTTAGTTATAATTGAGAGAGTACTTTCATAAATAATGTAATAAGGTACAATTCTAAAGTAAAGTTAATCATTTCTTGAATTGTATTCTTGGGATAATATTT < CP000730/2476476‑2476339 AAAATTATTTCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAA > 2:545421/1‑141AAAATTATTTCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAA > 1:665812/1‑141 AAATTATTTCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAG < 1:301698/141‑1 ATTTCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTT > 1:414963/1‑141 ATTTCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTT < 2:179402/141‑1 ATTTCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTT < 1:377717/141‑1 TCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAG < 2:450422/99‑1 TCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAG > 1:450422/1‑99 GAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAAATATAAGACTAAATATGTATGTATTGAACACCTTCTTTTT < 1:482645/141‑1 GAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAAATATAAGACTAAATATGTATGTATTG < 1:256678/114‑1 GAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAAATATAAGACTAAATATGTATGTATTG > 2:256678/1‑114 TGTTCAAATATAAGACTAAATATGTATGTATTGAACACCTTCTTTTTAGTTATAATTGAGAGAGTACTTTCATAAATAATGTAATAAGGTACAATTCTAAAGTAAAGTTAATCATTTCTTGAATTGTATTCTTGGGATAAT > 1:577603/1‑141 CAAATATAAGACTAAATATGTATGTATTGAACACCTTCTTTTTAGTTATAATTGAGAGAGTACTTTCATAAATAATGTAATAAGGTACAATTCTAAAGTAAAGTTAATCATTTCTTGAATTGTATTCTTGGGATAATATTT < 1:91276/141‑1 AAAATTATTTCATTATTTTACCATTATTATTTTACAAATATTATCCCAAGAATACAATTCAAGAAATGATTAACTTTACTTTAGAATTGTACCTTATTACATTATTTATGAAAGTACTCTCTCAATTATAACTAAAAAGAAGGTGTTCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2476304‑2476453‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaggtgttcaaATATAAGACTAAATATGTATGTATTGAACACCTTCTTTTTAGTTATAATTGAGAGAGTACTTTCATAAATAATGTAATAAGGTACAATTCTAAAGTAAAGTTAATCATTTCTTGAATTGTATTCTTGGGATAATATTT < CP000730/2476476‑2476339 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |