New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2777745	41 (0.650)	3 (0.050)	3/244	NT	6.9%	coding (495/705 nt)	arcR	transcriptional regulator
	?	CP000730	= 2777785	42 (0.710)					coding (455/705 nt)	arcR	transcriptional regulator

TTTTTCATCTTTAAGTTCATGAATAATATGACCAGCTGTTTCCCGGGAAATCCCAGCCATATCACTCATGAGTTGAATAGTTAAAAACTGTTTGATTTCATAAAATTCATCTTGATCGTATCCTACTGTCTGACATAGATGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2777601‑2777745 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atggcatTAACAAGTAAATTTGCTAAAGATCGAATTATCAAATTGATATGCCATCTATGTCAGACAGTAGGATACGATCAAGATGAATTTTATGAAATCAAACAGTTTTTAACTATTCAACTCATGAGTGATATGGCTGGGATTTC  <  CP000730/2777785‑2777647                                                                                                                                                                                                                                                                                              TTTTTCATCTTTAAGTTCATGAATAATATGACCAGCCGTTTCCCGGGAAATCCCCGCCATATCACTCATGAGTTGAATAGTTAAAAACTGTTTGATTTCATAAAATTCATCTTGATCTGATCCTACTGTCTGACAAAGAT                                                                                                                                                  >  1:502392/1‑140   TTTCATCTTTAAGTTCATGAATAATATGACCAGCTGTTTCCCGGGAAATCCCAGCCATATCACTCATGAGTTGAATAGTTAAAAACTGTTTGATTTCATAAAATTCATCTTGATCGTATCCTACTGTCTGACATAGATGG                                                                                                                                                >  1:388006/1‑140     TCATCTTTAAGTTCATGAATAATATGACCAGCTGTTTCCCGGGAAATCCCAGCCATATAACTCATGAGTTGAATAGTTAAAAACTGTTTGATTTCATAAAATTCATCTTGATCGTATCCTACTGTCTGACATAGATGGCA                                                                                                                                              >  2:615589/1‑140                                               GAAATCCCAGCCATATCACTCATGAGTTGAATAGTTAAAAACTGTTTGATTTCATAAAATTCATCTTGATCGTATCCTACTGTCTGACATAGATGGCATTAACAAGTAAATTTGCTAAAGATCGAATTATCAAATTGATA                                                                                                    <  1:665579/140‑1                                                              TCACTCATGAGTTGAATAGTTAAAAACTGTTTGATTTCATAAAATTCATCTTGATCGTATCCTACTGTCTGACATAGATGGCATTAAAAAGTAAATTTGCTAAAGATCGAATTATCAAATTGATATGCCATCTATGTCAG                                                                                     >  2:596489/1‑140                                                                                                                                  CTGACATAGATGGCATTAAAAAGTAAATTTGCTAAAGATCGAATTATCAAATTGATATGCCATCTATGTCAGACAGTAGGATACGATCAAGATGAATTTTATGAAATCAAACAGTTTTTAACTATTCAACTCATGAGTGA                 <  1:596489/140‑1                                                                                                                                              GCAATAACAAGTAAATTTGCTAAAGATCGAATTATCAAATTGATATGCCATCTATGTCAGACAGTAGGATACGACCAAAATTAATTTTATGAAATCAAACAGTTTTTAACTATTCAACTCATGAGTGATATGGCTGGGAT     <  2:605885/140‑1                                                                                                                                                 TTAACAAGTAAATTTGCTAAAGATCGAATTATCAAATTGATATGCCATCTATGTCAGACAGTAGGATACGATCAAGATGAATTTTATGAAATCAAACAGTTTTTAACTATTCAACTCATGAGTGATATGGCTGGGATTTC  >  1:674707/1‑140                                                                                                                                                                                                                                                                                              TTTTTCATCTTTAAGTTCATGAATAATATGACCAGCTGTTTCCCGGGAAATCCCAGCCATATCACTCATGAGTTGAATAGTTAAAAACTGTTTGATTTCATAAAATTCATCTTGATCGTATCCTACTGTCTGACATAGATGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2777601‑2777745 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atggcatTAACAAGTAAATTTGCTAAAGATCGAATTATCAAATTGATATGCCATCTATGTCAGACAGTAGGATACGATCAAGATGAATTTTATGAAATCAAACAGTTTTTAACTATTCAACTCATGAGTGATATGGCTGGGATTTC  <  CP000730/2777785‑2777647

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.