New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 2001491 =11 (0.170)3 (0.050) 3/244 NT 22.4% intergenic (‑100/+116) rrl3/USA300HOU_t0051 23S ribosomal RNA/tRNA‑Ala
?CP000730 2179606 = NA (NA)intergenic (‑50/+262) rrl4/rrs4 23S ribosomal RNA/16S ribosomal RNA

CTAGTGCCAAGGCATCCACCGTGCGCCCTTAATAACTTAATCTATGTTTCCACCATTTTTATAAGTCAAACGTTAACATGAAGTTACGTTCTTTTATAAAAAGATTTAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAAATAATGGTGGAGACTAGCGGGAT  >  CP000730/2001352‑2001625
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gcgagcgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagttaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaag                                                                                                                                        >  2:573992‑M1/140‑140 (MQ=255)
 cgagcgcttgactaaaaagaaattgtacattgaaaactagataattaagtaaattccccagtcgaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGa                                                                                                                                       >  1:166532‑M1/139‑140 (MQ=255)
 cgagcgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGa                                                                                                                                       <  2:573458‑M1/2‑1 (MQ=255)
 cgagcgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGa                                                                                                                                       >  2:109607‑M1/139‑140 (MQ=255)
 agagagcttaactaaaaagaaattgtacatggaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgaattactaaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGa                                                                                                                                       >  1:351255‑M1/139‑140 (MQ=255)
    gcgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGAaca                                                                                                                                    <  1:250259‑M1/5‑1 (MQ=255)
    gcgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGAaca                                                                                                                                    <  1:50184‑M1/5‑1 (MQ=255)
    gcgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgatcgaaaGAaca                                                                                                                                    <  2:297186‑M1/5‑1 (MQ=255)
     cgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGAacac                                                                                                                                   >  1:395715‑M1/135‑140 (MQ=255)
     cgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGAacac                                                                                                                                   >  1:565406‑M1/135‑140 (MQ=255)
     cgctagactaaaaagaaatagtacatttataactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaattaagcttgaattcataagaaataatcgctagtgttcgaaaGAacac                                                                                                                                   >  2:463333‑M1/135‑140 (MQ=255)
           actaaaaagaaattgtacattgaaaactagataagtaagtaaactatagcttttaccaagcaaagccgagtcaataaagaggtttaaataagattgaattgataagaaaaaatggctattgtgcgaaaGAAcactaacaa                                                                                                                             <  2:605817‑M1/12‑5 (MQ=255)
           actaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaaatcataagaaataatcgctagtgttcgaaagaacacacccaa                                                                                                                             <  1:81814‑M1/12‑7 (MQ=255)
            tatgcACCGTGCGTCCTTAATAACTTAATCTATGTTTCCACCATTTTTATAAGTCAAACGTTAACATGAAGTTACGTTCTTTTATAAAAAGATTTAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGat                                                                                                                            <  1:300462/136‑1 (MQ=0)
                                      aaccTATGTTTCCATCATTTTTATATTTCAAACCTTAACTTGAAGTTACTTTCTTTTATAAAAAGATTTAAACGCGTTATTAATCTTGTGAGTGTTCTCTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTAttt                                                                                                  <  1:264382/137‑1 (MQ=1)
                                             gtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaataactctataattcataagaaataatcgctagtgttctttcGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAActc                                                                                           >  1:712630‑M1/95‑140 (MQ=255)
                                                    aaatatagattttaacaagcaaaatcgagttaataaagagttttaaataagcttgtattcataagaaataatcgctagtgttctttcGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTc                                                                                    >  1:15305‑M1/88‑140 (MQ=255)
                                                                                                                cggtattaATCTTGTGAGTGTTCTTTCGAACACTAGCGATATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAaat                       <  2:638670/137‑1 (MQ=0)
                                                                                                                          cTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAAATAATGGTGga              <  2:449613/140‑1 (MQ=11)
                                                                                                                          atcgctagtgttcgaaaGAACACTAGCGATTATTACTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTACAATCTATATTTTAGTTACTTATCAAGTTTTCAATGTACAAATAATGGTGga              <  2:435506‑M1/123‑1 (MQ=255)
                                                                                                                              tgAGTGTTCTTTCGTTCACTAGCGATTATTTCTTATGTATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCATTGTACAAATAATGGTGGAGACt          <  1:224750/140‑1 (MQ=255)
                                                                                                                              tgAGTGTTCTTTCCAACATTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAAATAATGGTGGAGACt          <  2:112267/140‑1 (MQ=18)
                                                                                                                               gAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAAATAATGGTGGAGACTa         <  2:188742/140‑1 (MQ=34)
                                                                                                                                aGTGTTCTTTCGAAAACTAGCGAATATTTCTTATGAATTAAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTATTTACTTATCTAGTTTTCAATGTACAAATAATGGTGGAAACTAg        >  2:351532/1‑140 (MQ=11)
                                                                                                                                  tgtTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAAATAATGGTGGAGACTAGCg      >  2:466902/1‑140 (MQ=37)
                                                                                                                                    ttCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTATGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAACTAATGGTGGAGACTAGCggg    >  2:19814/1‑140 (MQ=255)
                                                                                                                                    atCTTTCGTACACTAGCGTTTATTTCTTATGAATTCAAGCTTATTTTAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAAATAATGGTGGAGACTAGCggg    <  1:369201/139‑1 (MQ=255)
                                                                                                                                      cTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAAATAATGGTGGAGACTAGCTGGAt  >  2:528599/1‑140 (MQ=38)
                                                                                                                                           |                                                                                                                                      
CTAGTGCCAAGGCATCCACCGTGCGCCCTTAATAACTTAATCTATGTTTCCACCATTTTTATAAGTCAAACGTTAACATGAAGTTACGTTCTTTTATAAAAAGATTTAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAAATAATGGTGGAGACTAGCGGGAT  >  CP000730/2001352‑2001625

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.