Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 39,378 C→A 100% D586Y (GAT→TAT)  mecA ← penicillin binding protein 2 prime

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP00073039,3780CA100.0% 204.7 / ‑6.5 74D586Y (GAT→TAT) mecApenicillin binding protein 2 prime
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base A (43/29);  minor base T (0/2);  total (43/31)
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

AATAGCCATCATCATGTTTGGATTATCTTTATCATATGATATAAACCACCCAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATCTTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGTTTTTCGTGTCTTTTAATAAGTGAGGTGCGTTAATATTGCCATT  >  CP000730/39241‑39513
                                                                                                                                         |                                                                                                                                       
aaTAGCCATCATCATGTTTGGATTATCTTTATCATATGATATAAACCACCCAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATAtatt                                                                                                                                       >  1:681225/1‑140 (MQ=255)
      catcatcatGTTTGGATTATCTTTATCATATGATATAAACCACCCAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTTAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTAt                                                                                                                                 <  1:457702/140‑1 (MQ=255)
      catcatcatGTTTATATAATCTTTATCATATGAAATAAACGACCCAATTTGTCTGCCAGTTTCTCCTTACTTCATATTTAGTTATTCAGTACCGGATGTACCAATGAAGTTTGCATATAATCTATAATTATATCATTTAt                                                                                                                                 >  2:264266/1‑140 (MQ=255)
         catcatGTTTGGATCATCTTTATCATACGATATAAACCACCCAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTAtgtg                                                                                                                              <  1:452672/140‑1 (MQ=255)
          atcatGTTTGGATTATCTTTATCATATGATATAAACCACCCAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATgtgt                                                                                                                             >  1:301581/1‑140 (MQ=255)
              tGTTTGGATTATCTTTATCATATGATATAAACCACCCAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTTAGTTCTGCAGTACCGGATTTGCAAATTAAGTTTACATAAGATCTATAAATCTATTCTTTATGTGTttta                                                                                                                         >  1:183651/1‑140 (MQ=255)
              tGTTTGGATTATCTTTATCATATGATATAAACCACCCAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTttta                                                                                                                         >  1:655994/1‑140 (MQ=255)
              tGTTTGGATTATCTTTATCATATGATATAAACCACCCAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTGATGTGTttta                                                                                                                         >  1:669755/1‑140 (MQ=255)
                 ttGGATTATCTTTATCATATGATATAAACCACCCAATTTGTCTGTCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATCAGATCTATAAATATATTCTTTATGTGTtttattt                                                                                                                      <  2:293575/140‑1 (MQ=255)
                         tCTTTATCATATGCTATAAACCACCCAATTTGTCTGACAGTTTCTACTTGTTTCATTTTGAGTTCTTCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTAAGACttg                                                                                                              >  2:460462/1‑140 (MQ=255)
                         tCTTTATCATATGATATAAACCACCCAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACttg                                                                                                              >  2:317930/1‑140 (MQ=255)
                            ttATCATATGATATAAACCACCCAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACttgttg                                                                                                           >  1:578900/1‑140 (MQ=255)
                             tATCATATTATATAAACCACCCAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGc                                                                                                          <  1:655928/140‑1 (MQ=255)
                             tATCATATGATATAAACCACCCAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGc                                                                                                          <  1:182680/140‑1 (MQ=255)
                                  tatGATATAAACCACCCAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCTTAcc                                                                                                     >  1:574459/1‑140 (MQ=255)
                                  tatGATATAAACCACCCAATTTGTCTGCCAGTTTCTCCTTGTTGCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGAACTATAAATATATTCTTTATGTGTTTTATTTACGACTAGTTGCATAcc                                                                                                     >  2:204799/1‑140 (MQ=255)
                                    tGATATAAACCACCCAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATATGTTTTATTTACGACTTGTTGCATACCAt                                                                                                   >  1:253476/1‑140 (MQ=255)
                                    tGATATAAACCACCCAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAAAATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCAt                                                                                                   >  1:108736/1‑140 (MQ=255)
                                     gATATAAACCACCCAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATc                                                                                                  <  2:247038/140‑1 (MQ=255)
                                       tataAACCATCCAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTAACGTGGGCGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAg                                                                                                <  1:529041/140‑1 (MQ=255)
                                       tataAACCACCCAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTTAGCTCTGCAGTACCGTATTTGCCAATTAATTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTTTTTACGACTTGATGCATACAATCAg                                                                                                >  1:426459/1‑140 (MQ=255)
                                        ataAACCACCCAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGt                                                                                               <  2:681225/140‑1 (MQ=255)
                                              caccCAATTTGTCTGCCAGTTTGTCATAGCTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATACGATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAg                                                                                         >  2:187361/1‑140 (MQ=255)
                                               accCAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGa                                                                                        >  2:385610/1‑140 (MQ=255)
                                                cccAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTCTTTACGACTTGTTTCATACCCTCAGTTAATAGAt                                                                                       >  2:222849/1‑140 (MQ=255)
                                                cccAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGAt                                                                                       >  1:548715/1‑140 (MQ=255)
                                                cccAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGAt                                                                                       >  1:195091/1‑140 (MQ=255)
                                                 ccAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGCCTTGTTGCATACCATCAGTTAATAGAtt                                                                                      >  1:25271/1‑140 (MQ=255)
                                                     ttggTCTGCCAGTTTCTCCTTGTTTCAAAAGGCGTTGTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAGTAGGTTGata                                                                                  >  2:666205/4‑140 (MQ=255)
                                                      ttGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGatat                                                                                 >  2:3108/1‑140 (MQ=255)
                                                      ttGTCTGCCAGTTTCTCCTTATTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATATACGTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATGGatat                                                                                 >  2:399378/1‑140 (MQ=255)
                                                            gCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCtt                                                                           >  1:701393/1‑140 (MQ=255)
                                                                 tttCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGaa                                                                      >  1:69844/1‑140 (MQ=255)
                                                                 tttCCCCTACTTGCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGGCTTGTTGCATACCATCAGTTAATAGATTGATATTTTCCTTGGac                                                                      >  2:84845/1‑139 (MQ=255)
                                                                  ttCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGaaa                                                                     >  1:550993/1‑140 (MQ=255)
                                                                          gTTTCATTTTGTGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATAttt                                                             <  2:411362/140‑1 (MQ=255)
                                                                                ttttGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTttcttc                                                       >  1:663098/1‑140 (MQ=255)
                                                                                 tttGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTcc                                                      <  2:486395/140‑1 (MQ=255)
                                                                                   tGAGTTCTGCAGTACCGGTTTTGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCaa                                                    <  2:557556/140‑1 (MQ=255)
                                                                                     tgTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAAc                                                  <  2:640364/139‑1 (MQ=255)
                                                                                      gTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTGTCGTCCaacct                                                 <  2:518722/140‑4 (MQ=255)
                                                                                       ttCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACtt                                                <  2:127020/140‑1 (MQ=255)
                                                                                       ttCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACtt                                                <  2:467075/140‑1 (MQ=255)
                                                                                        tcagCAGTGCCGGATTTGCCACTTAAGTTTGCATAAGTTCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGAGATTTTCTTTGGAAATAATATTTTTCTTCCAATCttt                                               <  2:510951/137‑1 (MQ=255)
                                                                                        tCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTATTTGGAAATAATATTTTTCTTCCAAACttt                                               >  1:213007/1‑140 (MQ=255)
                                                                                         cTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTg                                              >  1:477678/1‑140 (MQ=255)
                                                                                          tGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATCATATTGTTCTTCCAAACTTTGt                                             <  2:701393/140‑1 (MQ=255)
                                                                                           gCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGtt                                            <  2:268998/140‑1 (MQ=255)
                                                                                             aGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGtttt                                          <  1:225509/140‑1 (MQ=255)
                                                                                             aGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGATAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGtttt                                          >  1:182362/1‑140 (MQ=255)
                                                                                              gTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATTTTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGttttt                                         <  1:394302/140‑1 (MQ=255)
                                                                                              gTACCGGATTTACCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGttttt                                         <  2:409740/140‑1 (MQ=255)
                                                                                               tACCGGATTTGCTAAGTAAGTTTGCATAATATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCTAACTTTGTTTTTc                                        <  2:426459/140‑1 (MQ=255)
                                                                                                 ccGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGTTTTTCgt                                      <  2:301581/140‑1 (MQ=255)
                                                                                                  cGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGTTTTTCgtg                                     >  1:565874/1‑140 (MQ=255)
                                                                                                    gATTTGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACGTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTTTTCCAGAATTTGTTTTTCgggtt                                   >  2:613624/1‑139 (MQ=255)
                                                                                                     aTTTGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGTTTTTCGTGTCt                                  >  1:551557/1‑140 (MQ=255)
                                                                                                      tttGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGTTTTTCGTGTCtt                                 <  2:408629/140‑1 (MQ=255)
                                                                                                      tttGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGTTTTTCGTGTCtt                                 <  2:285086/140‑1 (MQ=255)
                                                                                                      tttGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGTTTTTCGTGTCtt                                 <  2:462385/140‑1 (MQ=255)
                                                                                                        tGCCAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGTTTTTCGTGTCtttt                               >  1:652789/1‑140 (MQ=255)
                                                                                                          ccAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAACCTTTGTTTTTCGTGTCTTTtaa                             >  2:112121/1‑140 (MQ=255)
                                                                                                           cAATTAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAAATTTGTTTTTCGTGTCTTTtaat                            >  2:379716/1‑140 (MQ=255)
                                                                                                               tAAGTTTTCATAATATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGTTTTTCGTGTCTTTTAATAAGt                        <  1:640551/140‑1 (MQ=255)
                                                                                                               tAAGTTTGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGTTTTTCGTGTCTTTTACTAAGt                        <  2:570223/140‑1 (MQ=255)
                                                                                                                    ttGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGTTTTTCGTGTCTTTTAATAAGTGAGGt                   >  2:678048/1‑140 (MQ=255)
                                                                                                                     tGCATAAGATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGTTTTTCGTGTCTTTTAATAAGTGAGGTg                  >  1:40195/1‑140 (MQ=255)
                                                                                                                       cATAATATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCACACTTTGTTTTTCGTGTCTTTTAATAAGTGAGGTGCg                <  2:333205/140‑1 (MQ=255)
                                                                                                                       cATAAGTTCTATAAATTTTTTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGTTTTTCGTGTCTTTTAATAAGTGAGGTGCg                <  2:46425/140‑1 (MQ=255)
                                                                                                                       cATAAGATCTATAAATATATTTTTTATGTGTTTTATTTACGACTTGTTGCATACGATTAGTTAATAGATTGATATTTTTTTTGGAAATAATATTTTTATTACAAATTTTTTTTTTTGTGTTTTTTAATAAGGAAGGtcaa                >  1:254461/1‑137 (MQ=255)
                                                                                                                         tAAGATTTACAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCCTACCATCGTTTTATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGTTTTTCGTGTCTTTTAATAAGTGAGGTGCGtt              <  2:360927/140‑1 (MQ=255)
                                                                                                                            gATCTATAAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCCGTTCATGGCTTGATATTTTCTTTGGAAATAATATTTTTTTTCCAAACATTGTTTTTCGTGTATTTTAATAAGTgcaatgggttact           >  1:457748/1‑128 (MQ=255)
                                                                                                                                 ataAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCCGTTGCTAGATTTATATTTTCTTGGGAAATAATATTTTTCTTCCAAACTTTGTTTTTCGTTTCTTTTAATAAGTGAGGTGCGTTAATATTGc      >  1:169755/1‑140 (MQ=255)
                                                                                                                                 ataAATATATTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGTTTTTCGTGTCTTTTAATAAGTGAGGTGCGTTAATAttcc      >  1:479920/1‑138 (MQ=255)
                                                                                                                                 ataAATATATTCTTTATGTGCTTTATTTACGACTTGTTGCATACCATCAGTTAATAGACTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGTTTTTCGTGTCTTTCATTAAGTGAGGTGCGTTAATATTGc      >  1:443747/1‑140 (MQ=255)
                                                                                                                                     atatatTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGTTTTTCGTGTCTTTTAATAAGTGAGGTGCGTTAATATTGCCatt  >  1:433003/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                       
AATAGCCATCATCATGTTTGGATTATCTTTATCATATGATATAAACCACCCAATTTGTCTGCCAGTTTCTCCTTGTTTCATTTTGAGTTCTGCAGTACCGGATTTGCCAATTAAGTTTGCATAAGATCTATAAATATCTTCTTTATGTGTTTTATTTACGACTTGTTGCATACCATCAGTTAATAGATTGATATTTTCTTTGGAAATAATATTTTTCTTCCAAACTTTGTTTTTCGTGTCTTTTAATAAGTGAGGTGCGTTAATATTGCCATT  >  CP000730/39241‑39513

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: