| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 729254 = | 71 (0.880) | 7 (0.090) | 7/254 | 10.6 | 8.9% | intergenic (+55/‑96) | ykvI/lipA | hypothetical membrane protein/possible S9C family peptidase |
| ? | CP000730 | 729295 = | 79 (1.070) | intergenic (+96/‑55) | ykvI/lipA | hypothetical membrane protein/possible S9C family peptidase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTGATTACAGTTATAAAAAGCGCAGTTATCATCGTCCATTTATTATCTTTATTCATTACATCGTACCTCTCTATTTGTTAGACGCTCATATTAATAGACTGAATAAATATAAAAAGCAATTCGCCCGATAAGAGTAGAGACGAATTGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/729405‑729254‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaattgcttttTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATGAATAAAGATAATAAATGGACGATGATAACTGCGCTTTTTATAACTGTAATCAGTGTATTGTTAGCATTTCATCTGAAACAA > CP000730/729295‑729433 CTGATTACAGTTATAAAAAGCGCAGTTATCATCGTCCATTTATTATCTTTATTCATTACATCGTACCTCTCTATTTGTTAGACGCTCATATTAATAGACTGAATAAATATAAAAAGCAATTCGCCCGATAAGAGTAGAGAC < 1:105722/141‑1CTGATTACAGTTATAAAAAGCGCAGTTATCATCGTCCATTTATTATCTTTATTCATTACATCGTACCTCTCTATTTGTTAGACGCTCATATTAATAGACTGAATAAATATAAAAAGCAATTCGCCCGATAAGAGTAGAGAC < 2:195633/141‑1 TGATTACAGTTATAAAAAGCGCAGTTATCATCGTCCATTTATTATCTTTATTCATTACATCGTACCTCTCTATTTGTTAGACGCTCATATTAATAGACTGAATAAATATAAAAAGCAATTCGCCCGATAAGAGTAGAGACG < 1:581193/141‑1 TGATTACAGTTATAAAAAGCGCAGTTATCATCGTCCATTTATTATCTTTATTCATTACATCGTACCTCTCTATTTGTTAGACGCTCATATTAATAGACTGAATAAATATAAAAAGCAATTCGCCCGATAAGAGTAGAGACG < 1:361387/141‑1 TGATTACAGTTATAAAAAGCGCAGTTATCATCGTCCATTTATTATCTTTATTCATTACATCGTACCTCTCTATTTGTTAGACGCTCATATTAATAGACTGAATAAATATAAAAAGCAATTCGCCCGATAAGAGTAGAGACG > 2:476992/1‑141 TGATTACAGTTATAAAAAGCGCAGTTATCATCGTCCATTTATTATCTTTATTCATTACATCGTACCTCTCTATTTGTTAGACGCTCATATTAATAGACTGAATAAATATAAAAAGCAATTCGCCCGATAAGAGTAGAGACG > 2:331446/1‑141 ATTACAGTTATAAAAAGCGCAGTTATCATCGTCCATTTATTATCTTTATTCATTACATCGTACCTCTCTATTTGTTAGACGCTCATATTAATAGACTGAATAAATATAAAAAGCAATTCGCCCGATAAGAGTAGAGACGAA > 1:663923/1‑141 TTACAGTTATAAAAAGCGCAGTTATCATCGTCCATTTATTATCTTTATTCATTACATCGTACCTCTCTATTTGTTAGACGCTCATATTAATAGACTGAATAAATATAAAAAGCAATTCGCCCGATAAGAGTAGAGACGAAT < 1:87945/141‑1 TTACAGTTATAAAAAGCGCAGTTATCATCGTCCATTTATTATCTTTATTCATTACATCGTACCTCTCTATTTGTTAGACGCTCATATTAATAGACTGAATAAATATAAAAAGCAATTCGCCCGATAAGAGTAGAGACGAAT < 2:464004/141‑1 TTACAGTTATAAAAAGCGCAGTTATCATCGTCCATTTATTATCTTTATTCATTACATCGTACCTCTCTATTTGTTAGACGCTCATATTAATAGACTGAATAAATATAAAAAGCAATTCGCCCGATAAGAGTAGAGACGAAT < 1:356622/141‑1 TTACAGTTATAAAAAGCGCAGTTATCATCGTCCATTTATTATCTTTATTCATTACATCGTACCTCTCTATTTGTTAGACGCTCATATTAATAGACTGAATAAATATAAAAAGCAATTCGCCCGATAAGAGTAGAGACGAAT < 2:464173/141‑1 TACAGTTATAAAAAGCGCAGTTATCATCGTCCATTTATTATCTTTATTCATTACATCGTACCTCTCTATTTGTTAGACGCTCATATTAATAGACTGAATAAATATAAAAAGCAATTCGCCCGATAAGAGTAGAGACGAATT < 2:347768/141‑1 ACAGTTATAAAAAGCGCAGTTATCATCGTCCATTTATTATCTTTATTCATTACATCGTACCTCTCTATTTGTTAGACGCTCATATTAATAGACTGAATAAATATAAAAAGCAATTCGCCCGATAAGAGTAGAGACGAATTG < 1:57661/141‑1 AGTTATAAAAAGCGCAGTTATCATCGTCCATTTATTATCTTTATTCATTACATCGTACCTCTCTATTTGTTAGACGCTCATATTAATAGACTGAATAAATATAAAAAGCAATTCGCCCGATAAGAGTAGAGACGAATTGCT > 2:115550/1‑141 TTATAAAAAGCGCAGTTATCATCGTCCATTTATTATCTTTATTCATTACATCGTACCTCTCTATTTGTTAGACGCTCATATTAATAGACTGAATAAATATAAAAAGCAATTCGCCCGATAAGAGTAGAGACGAATTGCTTT > 2:520813/1‑141 TATAAAAAGCGCAGTTATCATCGTCCATTTATTATCTTTATTCATTACATCGTACCTCTCTATTTGTTAGACGCTCATATTAATAGACTGAATAAATATAAAAAGCAATTCGCCCGATAAGAGTAGAGACGAATTGCTTTT > 1:387742/1‑141 TATAAAAAGCGCAGTTATCATCGTCCATTTATTATCTTTATTCATTACATCGTACCTCTCTATTTGTTAGACGCTCATATTAATAGACTGAATAAATATAAAAAGCAATTCGCCCGATAAGAGTAGAGACGAATTGCTTTT < 2:168697/141‑1 AATAGACTGAATAAATATAAAAAGCAATTCGCCCGATAAGAGTAGAGACGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGT < 2:819280/90‑1 AATAGACTGAATAAATATAAAAAGCAATTCGCCCGATAAGAGTAGAGACGAATTGCTTTTTATATTTATTCAGTCTATTAATAGGAGCGT > 1:819280/1‑90 ATAAAAAGCAATTCGCCCGATAAGAGTAGAGACGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATGAATAAAGATAATAAATGGACGATGATAACTGCGCTTTTT > 1:76845/1‑141 TCGCCCGATAAGAGTAGAGACGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATGAATAAAGATAATAAATGGACGATGATAATCTCGCTTGTTATAATTGTAATC > 2:171231/1‑141 GCCCGATAAGAGTAGAGACGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATTAATAAAGATAATAAATGGACGATGATAACTGCGCTTTTTATAACTGTAATCAG > 1:35169/1‑141 CCCGATAAGAGTAGAGACGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATGAATAAAGATAATAAATGGACGATGATAACTGCGCTTTTTATAACTGTAATCAGT > 2:441703/1‑141 CCGATAAGAGTAGAGACGAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGTTGTAACGAATAAAGATAATAAATGGACGATGATAACTGCGCTTTTTATAACTGTAATCAGTG > 1:388241/1‑141 GAATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATGAATAAAGATAATAAATGGACGATGATAACTGCGCTTTTTATAACTGTAATCAGTGTATTGTTAGCATTTCAT < 1:412462/141‑1 ATTGCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATGAATAAAGATAATAAATGGACGATGATAACTGCGCTTTTTATAACTGTAATCAGTGTATTGTTAGCATTTCATCT < 1:131032/141‑1 TGCTTTTNATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATGAATAAAGATAATAAATGGACGATGATAACTGCGCTTTTTATAACTGTAATCAGTGTATTGTTAGCATTTCCTCTGA < 2:649713/141‑1 GCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATGAATAAAGATAATAAATGGACGATGATAACTGCGCTTTTTATAACTGTAATCAGTGTATTGTTAGCATTTCATCTGAA > 1:471975/1‑141 GCTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATGAATAAAGATAATAAATGGACGATGATAACTGCGCTTTTTATAACTGTAATCAGTGTATTGTTAGCATTTCATCTGAA > 2:859559/1‑141 CTTTTTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATGAATAAAGATAATAAATGGACGATGATAACTGCGCTTTTTATAACTGTAATCAGTGTATTGTTAGCATTTCATCTGAAA > 2:640288/1‑141 TTTATATTTATTCCGTCTATGGATATGAGCGTCTAACAAATAGAGAGGTACGAGGGAATGAATAAAGATAATCAATGGACGCTGAGAGCTGCGCTTTTTATAACTGTAATCAGTGTATTGTTAGCATGTCATCTGAAACAA < 2:75201/141‑1 CTGATTACAGTTATAAAAAGCGCAGTTATCATCGTCCATTTATTATCTTTATTCATTACATCGTACCTCTCTATTTGTTAGACGCTCATATTAATAGACTGAATAAATATAAAAAGCAATTCGCCCGATAAGAGTAGAGACGAATTGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/729405‑729254‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaattgcttttTATATTTATTCAGTCTATTAATATGAGCGTCTAACAAATAGAGAGGTACGATGTAATGAATAAAGATAATAAATGGACGATGATAACTGCGCTTTTTATAACTGTAATCAGTGTATTGTTAGCATTTCATCTGAAACAA > CP000730/729295‑729433 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |