New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1380778	71 (0.880)	5 (0.100) +TGGCATTTACGAAGTTTAAATGTGCAATTAGAATATATGTATAACAATATT	3/176	10.1	10.7%	intergenic (+2875/‑300)	sbcC/acnA	exodeoxyribonuclease SbcC/aconitate hydratase
	?	CP000730	2830190 =	61 (0.750)					intergenic (+18/+173)	icaC/USA300HOU_2670	intercellular adhesion protein C/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/1380725‑1380778 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCG  >  CP000730/2830190‑2830241                                                       |||||||||||||||||||||||||||||||||||||||||||||||||||                                                     GGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATTGGCATTTACGAAGTTTAAATGTGCAATTAGAATATATGTATAACAATATTAAACACGCGG                                            <  1:291772/115‑1 GGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATTGGCATTTACGAAGTTTAAATGTGCAATTAGAATATATGTATAACAATATTAAACACGCGG                                            >  2:291772/1‑115           ACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATTGGCATTTACGAAGTTTAAATGTGCAATTAGAATATATGTATAACAATATTAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTT        <  1:795870/141‑1            CGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATTGGCATTTACGAAGTTTAAATGTGCAATTAGAATATATGTATAACAATATTAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTA       <  2:739635/141‑1                 TAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATTGGCATTTACGAAGTTTAAATGTGCAATTAGAATATATGTATAACAATATTAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCG  <  2:793136/141‑1                                                       |||||||||||||||||||||||||||||||||||||||||||||||||||                                                     GGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/1380725‑1380778 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCG  >  CP000730/2830190‑2830241

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.