New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	855629 =	81 (1.000)	5 (0.100) +TCCCATTGGCATTTACGAAGTTTAAATGTGCAATTAGAATATATGTATAACAATATT	3/164	9.5	10.7%	intergenic (+160/+29)	USA300HOU_0799/USA300HOU_0800	hypothetical protein/hypothetical protein
	?	CP000730	2830190 =	61 (0.750)					intergenic (+18/+173)	icaC/USA300HOU_2670	intercellular adhesion protein C/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAACCAGTATGACAGACAACACAATTAATTAGGTTGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTG  >  CP000730/855489‑855759                                                                                                                                             |                                                                                                                                   gAACCAGTATGACAGACAACACAATTAATTAGGTTGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAgg                                                                                                                                    <  2:669115/141‑1 (MQ=255)   aCCAGTATGACAGACAACACAATTAATTAGGTTGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGCACTTTATTTTGAGTGAGGTg                                                                                                                                  >  2:567051/1‑141 (MQ=255)   aCCAGTATGACAGACAACACAATTAATTAGGTTGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTg                                                                                                                                  <  1:648773/141‑1 (MQ=255)   aCCAGTATGACAGACAACACAATTAATTAGGTTGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTg                                                                                                                                  <  1:648824/141‑1 (MQ=255)     cAGTATGACAGACAACACAATTAATTAGGTTGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTggg                                                                                                                                >  1:413980/1‑141 (MQ=255)           gacagacaACACAATTAATTAGGTTGTCTCGAATATTGGTTCCTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGAcgacg                                                                                                                          <  2:826263/141‑5 (MQ=255)            acagacaACACAATTAATTAGGTTGTCTCGAATATTGGTTCTTATTTTTATAATGGTTAATTAGGGGAGAGCTGATACTTAAATAGTTAGGTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGaaa                                                                                                                         >  1:618833/1‑141 (MQ=255)             cagacaACACAATTAATTAGGTTGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAAt                                                                                                                        <  1:828847/141‑1 (MQ=255)             cagacaACACAATTAATTAGGTTGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAAt                                                                                                                        <  1:148705/141‑1 (MQ=255)             cagacaACACAATTAATTAGGTTGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAAt                                                                                                                        <  2:719448/141‑1 (MQ=255)                acaacaCAATTAATTAGGTTGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGat                                                                                                                     >  2:701911/1‑141 (MQ=255)                 caacctaattaattGTGTTGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGata                                                                                                                    >  2:240610/7‑141 (MQ=255)                    cacaATTAATTAGGTTGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATAttt                                                                                                                 >  2:382638/1‑141 (MQ=255)                        attaattaGGTTGTCTCGAATACGGGTCCTGATTTGTAGAAGTTTTAAAGAGATGAGAGACGAGACGGAAGTAGTTAGTTATGGATTTTACGGAGAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGc                                                                                                             <  1:126481/141‑1 (MQ=255)                         ttaattaGGTTGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCa                                                                                                            >  2:97906/1‑141 (MQ=255)                               aGGTTGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAattt                                                                                                      >  2:565050/1‑141 (MQ=255)                                ggatGTCTCGAATATTGATACTTATTTTTATATTTGTTAAACAGGGTGGATATGATACTTAAAAAGTTAGTTATTTATTTTACGGATAGTGAAAATTATTTTGAGTGAGGTGGGAAAGACATGATATTTTCCGAAActtta                                                                                                     >  2:30740/4‑141 (MQ=255)                                ggTTGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAattta                                                                                                     >  1:616297/1‑141 (MQ=255)                                  ttGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAatttatt                                                                                                   <  2:191610/141‑1 (MQ=255)                                  ttGTCTAGAATATTGGTTCTTATTTTTATAATTGTTAATGAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAatttatt                                                                                                   <  2:198565/141‑1 (MQ=255)                                   tGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAatttattt                                                                                                  <  2:462772/141‑1 (MQ=255)                                             atTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCa                                                                                        <  1:122704/141‑1 (MQ=255)                                                ggTTCTTATTTTTATAATTGTTAATTAGGGGCGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCAccc                                                                                     >  1:112133/1‑141 (MQ=255)                                                 gTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTTAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCAcccc                                                                                    <  2:224233/141‑1 (MQ=255)                                                    tttATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAAc                                                                                 <  2:7155/140‑1 (MQ=255)                                                    cTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAAc                                                                                 <  1:269733/141‑1 (MQ=255)                                                    cTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAAc                                                                                 <  2:51420/141‑1 (MQ=255)                                                    cTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAAc                                                                                 <  2:51436/141‑1 (MQ=255)                                                       aTTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTc                                                                              >  1:69013/1‑141 (MQ=255)                                                         ttttATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCa                                                                            <  1:10038/141‑1 (MQ=255)                                                                    ttAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGa                                                                 >  2:419183/1‑141 (MQ=255)                                                                    ttAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGa                                                                 <  2:445013/141‑1 (MQ=255)                                                                      aaTTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGaaa                                                               >  1:359872/1‑141 (MQ=255)                                                                      aaTTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCACAACTTCCATTGCCTGTAGaaa                                                               >  2:74736/1‑141 (MQ=255)                                                                       aTTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAAt                                                              >  1:97047/1‑141 (MQ=255)                                                                       aTTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAAt                                                              <  2:249275/141‑1 (MQ=255)                                                                       aTTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAAt                                                              >  2:2405/1‑141 (MQ=255)                                                                         tAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTg                                                            <  2:413980/141‑1 (MQ=255)                                                                          aGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTgg                                                           >  1:792714/1‑141 (MQ=255)                                                                            gggAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGaa                                                         >  2:770172/1‑141 (MQ=255)                                                                             ggAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGaaa                                                        <  2:319573/141‑1 (MQ=255)                                                                               agagaTGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATc                                                      >  2:682982/1‑141 (MQ=255)                                                                               agagaTGATACTTAAATAATTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATc                                                      <  2:686591/141‑1 (MQ=255)                                                                                gagaTGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATcc                                                     >  2:94761/1‑141 (MQ=255)                                                                                 agaTGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGatttcca                                                    <  1:814292/141‑7 (MQ=255)                                                                                 agaTGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCa                                                    >  2:330698/1‑141 (MQ=255)                                                                                       tACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTtct                                              <  2:837557/141‑1 (MQ=255)                                                                                        aCTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTtctc                                             <  1:792158/141‑1 (MQ=255)                                                                                           tAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTAt                                          <  1:34292/141‑1 (MQ=255)                                                                                               tagttagtTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTg                                      <  1:304305/141‑1 (MQ=255)                                                                                                 gttagttaTTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTtctacaggcaatg                                    <  2:608558/141‑11 (MQ=255)                                                                                                  ttagttaTTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTgggg                                   <  1:240610/141‑1 (MQ=255)                                                                                                   tagttaTTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGc                                  >  1:29862/1‑141 (MQ=255)                                                                                                   tagttaTTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGc                                  >  2:565167/1‑141 (MQ=255)                                                                                                      ttatttatTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGcccc                               <  2:690659/141‑1 (MQ=255)                                                                                                        atttatttTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTggggtggggc                             <  2:789586/141‑7 (MQ=255)                                                                                                         tttatttTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGccccacc                            <  1:659289/141‑1 (MQ=255)                                                                                                           tatttTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGccccacccc                          >  1:409415/1‑141 (MQ=255)                                                                                                              tttACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAAc                       <  2:802325/141‑1 (MQ=255)                                                                                                               ttACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACt                      >  2:91857/1‑141 (MQ=255)                                                                                                               ttACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACt                      <  2:769388/141‑1 (MQ=255)                                                                                                                tACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATGGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACtt                     >  1:353559/1‑141 (MQ=255)                                                                                                                 atggATAGTGAAATTTATTTTGAGTTAGTGCAGTTAGAAATGGTGTTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTg                    >  2:38461/3‑141 (MQ=17)                                                                                                                 aCGGATAGTGAAATTTATTTTGAGTGAGGTTGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTCGGGCCCCACCCCAACTTg                    >  2:845971/1‑141 (MQ=255)                                                                                                                 aCGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTg                    >  1:574695/1‑141 (MQ=255)                                                                                                                 aCGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTg                    <  1:603446/141‑1 (MQ=255)                                                                                                                 aCGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTg                    <  1:360059/141‑1 (MQ=255)                                                                                                                 aCGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTg                    <  1:654930/141‑1 (MQ=255)                                                                                                                  cGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGc                   <  2:602859/141‑1 (MQ=255)                                                                                                                   ggATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCa                  <  2:309225/141‑1 (MQ=255)                                                                                                                   ggATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCa                  <  1:537020/141‑1 (MQ=255)                                                                                                                     aTAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTCTGTTGGGGCCCCACCCCAACTTGCCtt                >  1:74053/1‑141 (MQ=255)                                                                                                                        ttGAANTTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCNCTATGTTGGGGCACCACCCCAACTTGCATTGcc             <  1:270575/140‑1 (MQ=255)                                                                                                                          gAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTg           <  2:104072/141‑1 (MQ=255)                                                                                                                             atttatttTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTCCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAg        <  2:744214/141‑1 (MQ=255)                                                                                                                              tttatttTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGa       >  2:372513/1‑141 (MQ=255)                                                                                                                               ttatttTGAGTGAGGTGGGACAGAAATGATATTTTCGAAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGaa      >  1:626594/1‑141 (MQ=255)                                                                                                                                  ttttGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTTGAAATCCCATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAAtt   >  2:762151/1‑141 (MQ=255)                                                                                                                                  ttttGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAAtt   >  1:817343/1‑141 (MQ=255)                                                                                                                                  ttttGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAAtt   >  1:365143/1‑141 (MQ=255)                                                                                                                                   tttGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGATATTg  >  2:509442/1‑141 (MQ=255)                                                                                                                                             |                                                                                                                                   GAACCAGTATGACAGACAACACAATTAATTAGGTTGTCTCGAATATTGGTTCTTATTTTTATAATTGTTAATTAGGGGAGAGATGATACTTAAATAGTTAGTTATTTATTTTACGGATAGTGAAATTTATTTTGAGTGAGGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTCCATTGCCTGTAGAAATTGGAAATCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGCCTGTAGAAATTG  >  CP000730/855489‑855759

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.