New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 558914	1 (0.030)	6 (0.180)	5/264	4.4	86.3%	intergenic (+127/‑43)	USA300HOU_t0012/rrl2	tRNA‑Ile/23S ribosomal RNA
	?	CP000730	2179617 =	NA (NA)					intergenic (‑61/+251)	rrl4/rrs4	23S ribosomal RNA/16S ribosomal RNA
Rejected: Coverage evenness skew score above cutoff.

GCCCACCATTATTTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAGTGTTCGAAAGAACACTCACAAG  >  CP000730/558780‑558920                                                                                                                                       |       gCCCACCATTATTTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAGTGTTCGAAAGAACACTCACAAg  <  1:205571/141‑1 (MQ=31)                                                                                                                                       |       GCCCACCATTATTTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAACCGAGTGAATAAAGAGTTTTAAATAAGCTTGAATTCATAAGAAATAATCGCTAGTGTTCGAAAGAACACTCACAAG  >  CP000730/558780‑558920

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.