New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 5146061 (0.030)6 (0.180) 5/264 4.4 75.2% intergenic (+274/‑100) rrs1/rrl1 16S ribosomal RNA/23S ribosomal RNA
?CP000730 2001487 = 3 (0.090)intergenic (‑96/+120) rrl3/USA300HOU_t0051 23S ribosomal RNA/tRNA‑Ala
Rejected: Coverage evenness skew score above cutoff.

ATAAGTCAAACGTTAACATGAAGTTACGTTCTTTTATAAAAAGATTTAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAAATAATGGTGGAGACTA  >  CP000730/2001412‑2001618
                                                                           |                                                                                                                                   
atgaGTCAAACGTTAATATGAAGTTACGTGCTTTTATAAAAAGCGTTAGACGCGTTATTAATGTTTGGAGTGTTCTTTCGAACACTAGCGTTTATTTCTGATGTATTCAAGCTTATTTAAAACTCTTTCTTCACTGGGttt                                                                    >  2:83680/4‑141 (MQ=1)
                                                                tgtgAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAAATAATGGTGGAGAc    <  1:40799/141‑1 (MQ=32)
                                                                  tgAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAAATAATGGTGGAGACTa  >  1:314783/1‑141 (MQ=34)
                                                                           |                                                                                                                                   
ATAAGTCAAACGTTAACATGAAGTTACGTTCTTTTATAAAAAGATTTAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAAATAATGGTGGAGACTA  >  CP000730/2001412‑2001618

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.