New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 802141	31 (1.140)	3 (0.120)	3/256	3.9	9.2%	intergenic (+382/+242)	USA300HOU_0748/dgkA1	hypothetical protein/possible diacylglycerol kinase
	?	CP000730	= 802168	31 (1.240)					intergenic (+409/+215)	USA300HOU_0748/dgkA1	hypothetical protein/possible diacylglycerol kinase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/801992‑802141 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatcggatgaCGTGTAATCTGCCATAGATTAACACATTCATCCGATTTATAATAATAAGATAAACTAACATTTATTGAGAGCGGGACGGAAATGATAAAGAACGACTAATGATTGATTATGTAGCGATTCTTTATCATTAGTCACAG  <  CP000730/802168‑802032                                                                                                                                                                                                                                                                                                 GAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAA                                                                                                                                                    >  1:7586/1‑141  AGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAA                                                                                                                                                   >  2:110049/1‑141     GTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCG                                                                                                                                                <  2:44108/141‑1      TAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGG                                                                                                                                               >  2:156313/1‑141                              GTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGACGTGTAATCTGCCATAGATT                                                                                                                       <  2:126135/141‑1                                                                                               ATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCAT                                                                                                            <  2:226043/87‑1                                                                                               ATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCAT                                                                                                            >  1:226043/1‑87                                                                                                                                                   ATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTTATAATAATAAGATAAACTAACATTTATTGAGAGCGGGACGGAAATGATAAAGAACGACTAATGATTGATTATGTAGCGATTCTTTATCATTAGTCACAG  >  1:282318/1‑141                                                                                                                                                                                                                                                                                                 GAGTGTAACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/801992‑802141 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatcggatgaCGTGTAATCTGCCATAGATTAACACATTCATCCGATTTATAATAATAAGATAAACTAACATTTATTGAGAGCGGGACGGAAATGATAAAGAACGACTAATGATTGATTATGTAGCGATTCTTTATCATTAGTCACAG  <  CP000730/802168‑802032

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.