New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 512620 =56 (1.140)32 (0.950)
+TTATCTTGTCCATTTTATTTTTTAACCAAAATTTGATTAA
27/180 NT 45.3% intergenic (+688/‑173) recR/rrs1 recombination protein RecR/16S ribosomal RNA
?CP000730 1998278 = NA (NA)intergenic (‑6/+5) USA300HOU_t0050/rrf4 tRNA‑Val/5S ribosomal RNA

GATTACAAGTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAATTTATAC  >  CP000730/1998141‑1998418
                                                                                                                                         |                                                                                                                                            
gATTACAAGTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTaaaa                                                                                                                                           >  2:472739/1‑141 (MQ=38)
     aaaGTCAGTTGCTCGACCAAGTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGcc                                                                                                                                      <  2:3801/140‑1 (MQ=255)
          cAGTTGCTCTACCAATTGAGCTAGGCCGGCAAGATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATGTCAAACTGCCTGGCa                                                                                                                                 >  2:452380/1‑141 (MQ=255)
                 tctACCCATTGGGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCt                                                                                                                          <  1:168552/141‑1 (MQ=255)
                 tctACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGGATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTATCCGATTTAAAACTGCCTGGCAACGTTCt                                                                                                                          >  1:318283/1‑141 (MQ=255)
                           gAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCgg                                                                                                                <  1:223705/141‑1 (MQ=255)
                           gAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGGTCTACTCTAGCgg                                                                                                                >  1:471827/1‑141 (MQ=255)
                            ggCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGACCCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGa                                                                                                               <  2:488113/140‑1 (MQ=255)
                             gcaaGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGATCCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGaa                                                                                                              <  1:264667/138‑1 (MQ=255)
                             gCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGaa                                                                                                              <  1:29894/141‑1 (MQ=255)
                               tAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACg                                                                                                            <  1:326216/141‑1 (MQ=255)
                               caGGCCGGGAATATGTAAGAATAAATGGTGGAGAATGATGGGCTGAAACAGCTGTTGATGGACATGAAAGACAGCTCCTCTCCAAGCTTTATTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACg                                                                                                            <  2:395671/140‑1 (MQ=12)
                                        aaTATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGa                                                                                                   >  1:42292/1‑141 (MQ=255)
                                        aaTATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGa                                                                                                   >  2:289370/1‑141 (MQ=255)
                                        aaTATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGa                                                                                                   >  1:82726/1‑141 (MQ=255)
                                         atatGTAAGAATAAATGGTGGAGAAAGACGGGTTCGAACCGCCACACCTCATCATGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGAc                                                                                                  <  1:550156/141‑1 (MQ=17)
                                           atGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTa                                                                                                >  2:500906/1‑141 (MQ=255)
                                            tGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTAc                                                                                               <  1:113468/141‑1 (MQ=255)
                                             gTAAGAATAAATGGTGGAGAATGACGGGTTCGCACCCCCGACCCTCTGCTTGTGAGGCAGAAGCTCTCCCACCTGAGCTAATTCTCCGATTTAAAACTGCCTGACACCGTTCTCCTCTAGCGGAACGTAAGTTCCACTTcc                                                                                              >  2:427126/1‑141 (MQ=14)
                                             gTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTAcc                                                                                              >  1:149635/1‑141 (MQ=255)
                                             gTAAGAATAAATGGTGGAGAAAGACGGGTTCGAACAGCCAACCCTCTGCTTGTAAGGCAGATACTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTAGCAACGTTCTACTCGAGCGGAAAGTAAGTTCGACTAcc                                                                                              >  1:116782/1‑141 (MQ=14)
                                                     aaaTGGTGGAGAATGACGGCTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGc                                                                                      >  1:307960/1‑141 (MQ=255)
                                                        tggtggAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTACTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTaa                                                                                   <  1:385101/141‑1 (MQ=255)
                                                             gagaGTGCCGGGTTCGATCCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCGATCCGAGCTAATTCTCCGATTTAAATCTGCCGGTCAACGTTCTACTCTAGCGGAGCGTAAGTTCGACTACCATCGACGCTAATGAGc                                                                              <  2:171091/141‑1 (MQ=14)
                                                                  tGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAAc                                                                         <  1:258611/141‑1 (MQ=255)
                                                                   gACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGATCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTCCTCTAGCGTAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACt                                                                        >  1:109535/1‑141 (MQ=255)
                                                                   gACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGGGCTTAACt                                                                        >  2:67482/1‑141 (MQ=255)
                                                                    aCGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACtt                                                                       >  2:510738/1‑141 (MQ=255)
                                                                    aCGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTATCCCCGCTGAGCTAATTCTCCGATTTCAAACTGCCTGGCAACGTTATACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACtt                                                                       >  2:468105/1‑141 (MQ=255)
                                                                      gggTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCGTCGACGCTAAGGGGCTTACCTTCt                                                                     >  1:285076/1‑141 (MQ=255)
                                                                      gggTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCt                                                                     >  1:176675/1‑141 (MQ=255)
                                                                      gggTTCGAACCGCCGACCCCCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTTGCGGAAGGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCt                                                                     <  2:363935/141‑1 (MQ=255)
                                                                       gtgtCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCtg                                                                    <  2:405871/138‑1 (MQ=255)
                                                                          tCGTACCGCCCACCCTCTGCTGGCTAGGCTCATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTgtgt                                                                 <  2:438055/141‑1 (MQ=14)
                                                                           cGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGtt                                                                >  1:119231/1‑141 (MQ=255)
                                                                              aCCGCCGACCCTCTGCTTGTAAGGCAAATGCTCTCCCAGCTGAGCTATTTCTCCGATTTAAAACTGCCTGGCAACGGTCTACGCTAGCTGAACGTAAGTTGGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCgg                                                             <  2:468419/141‑1 (MQ=14)
                                                                               ccgccgACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGc                                                            >  1:447792/1‑141 (MQ=255)
                                                                               ccgccgACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGc                                                            <  2:559641/141‑1 (MQ=255)
                                                                                  ccgACCCTCTGCTTGTAAGGCAGATGCCCACCCAGCTGACCTAATTCTCCGATGTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGGAAGTTCGACTACCATCGACGCTAAGGAGCTGAACTTCTGTGTTCGGCATg                                                         >  2:232628/1‑141 (MQ=14)
                                                                                    gACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGTCTACCATCGACGCTAAGGTGCTTATCTTCCGTGTTCGGCATggg                                                       <  1:306950/141‑1 (MQ=255)
                                                                                    gACCCTCTGCTTGTAAGGCAGATGCGCTCCCAGCTTAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATggg                                                       <  1:213397/141‑1 (MQ=255)
                                                                                     ccccTCCGCTTGTAAGGCAGGTGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCCTCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGa                                                      <  2:538495/140‑1 (MQ=255)
                                                                                      cccTCTGCTTGTAAGGCCGATGGTCTCCCAGCTGGGCTTGTTCTTCGATGGTGAGCTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGaa                                                     <  1:181741/141‑1 (MQ=11)
                                                                                      cccTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGaa                                                     >  1:550688/1‑141 (MQ=255)
                                                                                       ccTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGCCTACCATCGACGCTAAGGGGCTTAACTTCTGTGTTCGGCATGGGAAc                                                    >  1:220102/1‑141 (MQ=255)
                                                                                        ctctGCTTGTAAGATAGATGCTCCCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACa                                                   <  2:508077/141‑1 (MQ=255)
                                                                                         tctGCTTGTAAGGCAGATGCTCTCTCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCAAAAAACAAATAATGGCGTCTACCAGCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGGACAg                                                  >  1:266384/1‑141 (MQ=14)
                                                                                          ctGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTTCTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAgg                                                 <  1:472739/141‑1 (MQ=255)
                                                                                                    ggCAGGTTCTCGCCCAGCTGAGCTAATTCTCCGATTTAAATCTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAcctcc                                       <  2:36955/141‑1 (MQ=255)
                                                                                                     gCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTTCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAcctcct                                      >  2:280227/1‑141 (MQ=255)
                                                                                                      cAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACAGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCtt                                     >  1:401387/1‑141 (MQ=255)
                                                                                                       agagGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCtt                                     <  2:274086/140‑1 (MQ=255)
                                                                                                       aGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAGCTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCtt                                     >  1:274098/1‑140 (MQ=255)
                                                                                                       aGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAGCTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCtt                                     <  2:274098/140‑1 (MQ=255)
                                                                                                       aGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCtt                                     >  1:274086/1‑140 (MQ=255)
                                                                                                         aTGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTAGTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTCAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACATCCTTGCt                                  <  2:415060/141‑1 (MQ=255)
                                                                                                         aTGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCt                                  >  1:398611/1‑141 (MQ=255)
                                                                                                          tGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCta                                 >  2:116911/1‑141 (MQ=255)
                                                                                                          tGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCta                                 <  2:307960/141‑1 (MQ=255)
                                                                                                                 ccAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTCACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTccc                          >  2:44173/1‑139 (MQ=255)
                                                                                                                      tGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATCGTCACCAGAc                     >  1:537475/1‑141 (MQ=255)
                                                                                                                         gCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACata                  >  1:389908/1‑141 (MQ=255)
                                                                                                                           tAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATg                >  1:451588/1‑141 (MQ=255)
                                                                                                                           tAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGGGACCTCCGCGCTATAGTCACCAGACATCTg                >  2:89491/1‑141 (MQ=255)
                                                                                                                            aaTTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGa               >  1:480914/1‑141 (MQ=255)
                                                                                                                              ttCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAAt             <  2:149635/141‑1 (MQ=255)
                                                                                                                              atccccGTTTTAAAACTGCCTGGCAACGTTCTACTCCAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAAt             <  2:116782/137‑1 (MQ=255)
                                                                                                                                      tttAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAATTta     <  1:500906/141‑1 (MQ=35)
                                                                                                                                         aaaaCTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATGGGCCCCAGACGTATGAATGTAATTTATAc  >  1:476622/1‑141 (MQ=255)
                                                                                                                                         aaaaCTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAATTTATAc  >  1:161090/1‑141 (MQ=33)
                                                                                                                                         |                                                                                                                                            
GATTACAAGTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAATTTATAC  >  CP000730/1998141‑1998418

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.