New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 2431245 =103 (1.040)3 (0.030) 3/276 11.6 3.2% coding (285/693 nt) USA300HOU_2294 transcriptional regulator
?CP000730 2431338 = 83 (0.900)coding (378/693 nt) USA300HOU_2294 transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 103 total aligned reads displayed.

AGGTGTTAAAATTTATGCGCATTATGGGAAAAATGGTGGTTACCAAATACAACAAGCACAATCTAAAATTGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGCTTAAACGCATGGACTTTTATATTAAATTTGATGACACACAACATATGACACTCCCAATGCTGTTTTCCGA  >  CP000730/2431098‑2431385
                                                                                                                                                   |                                                                                                                                            
aGGTGTTAAAATTTATGCGCATTATGGGAAAAATGGTGGTTACCAAATACAACAAGCACAATCTAAAATTGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTATTGCTTAATGAAAGTCAGTCGTACTCGACATTACCa                                                                                                                                              >  2:291535/1‑148 (MQ=255)
aGGTGTTAAAATTTATGCGCATTATGGGAAAAATGGTGGTTACCAAATACAACAAGCACAATCTAAAATTGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCa                                                                                                                                              <  2:529427/148‑1 (MQ=255)
aGGTGTTAAAATTTATGCGCATTATGGGAAAAATGGTGGTTACCAAATACAACAAGCACAATCTAAAATTGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCa                                                                                                                                              >  2:560422/1‑148 (MQ=255)
  gtgtTAAAATTTATGCGCATTATGGGAAAAATGGTGGTTACCAAATACAACAAGCACAATCTAAAATTGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCata                                                                                                                                            <  1:210733/148‑1 (MQ=255)
       aaaaTTTATGCGCATTATGGGAAAAATGGTGGTTACCAAATACAACAAGCACAATCTAAAATTGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATaaaa                                                                                                                                       <  1:309466/148‑1 (MQ=255)
        aaaTTTATGCGCATTATGGGAAAAATGGTGGTTACCAAATACAACAAGCACAATCTAAAATTGCATTAAGCTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTGAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAg                                                                                                                                      <  2:827013/148‑1 (MQ=255)
        aaaTTTATGCGCATTATGGGAAAAATGGTGGTTACCAAATACAACAAGCACAATCTAAAATTGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAg                                                                                                                                      <  1:284310/148‑1 (MQ=255)
        aaaTTTATGCGCATTATGGGAAAAATGGTGGTTACCAAATACAACAAGCACAATCTAAAATTGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAg                                                                                                                                      <  1:284319/148‑1 (MQ=255)
        aaaTTTATGCGCATTATGGGAAAAATGGTGGTTACCAAATACAACAAGCACAATCTAAAATTGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAg                                                                                                                                      <  1:800647/148‑1 (MQ=255)
          aTTTATGCGCATTATGGGAAAAATGGTGGTTACCAAATACAACAAGCACAATCTAAAATTGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCg                                                                                                                                    <  2:880251/148‑1 (MQ=255)
          aTTTATGCGCATTATGGGAAAAATGGTGGTTACCAAATACAACAAGCACAATCTAAAATTGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACGCGACATTACCATATAAAAGCg                                                                                                                                    <  1:544002/148‑1 (MQ=255)
                 cgcATTATGGGAAAAATGGTGGTTACCAAATACAACAAGCACAATCTAAAATTGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCaa                                                                                                                             <  2:780188/148‑1 (MQ=255)
                  gcATTATGGGAAAAATGGTGGTTACCAAATACAACAAGCACAATCTAAAATTGCATTAAACTTATCTGGATACCTGTCACCATCTTGATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAAc                                                                                                                            <  2:248887/148‑1 (MQ=255)
                  gcATTATGGGAAAAATGGTGGTTACCAAATACAACAAGCACAATCTAAAATTGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAAc                                                                                                                            <  1:476656/148‑1 (MQ=255)
                    aTTATGGGAAAAATGGTGGTTACCAAATACAACAAGCACAATCTAAAATTGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGc                                                                                                                          <  2:792219/148‑1 (MQ=255)
                    aTTATGGGAAAAATGGTGGTTACCAAATACAACAAGCACAATCTAAAATTGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGc                                                                                                                          <  2:329336/148‑1 (MQ=255)
                    aTTATGGGAAAAATGGTGGTTACCAAAGACAACAAGCACAATCTAAAATTGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGc                                                                                                                          >  1:604541/1‑148 (MQ=255)
                     ttATGGGAAAAATGGTGGTTACCAAATACAACAAGCACAATCTAAAATTGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCa                                                                                                                         >  2:363382/1‑148 (MQ=255)
                     ttATGGGAAAAATGGTGGTTACCAAATACAACAAGCACAATCTAAAATTGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCa                                                                                                                         <  2:823171/148‑1 (MQ=255)
                     ttATGGGAAAAATGGTGGTTACCAAATACAACAAGCACAATCTAAAATTGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAAAGCa                                                                                                                         >  1:339997/1‑148 (MQ=255)
                      tATGGGTAAAATGGTGGTTACCAAATACAACAAGCACAATCTAAAATTGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCaa                                                                                                                        <  2:348817/148‑1 (MQ=255)
                         gggAAAAATGGTGGTTACCAAATACAACAAGCACAATCTAAAATTGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATta                                                                                                                     <  2:176704/148‑1 (MQ=255)
                          ggAAAAATGGTGGTTACCAAATACAACAAGCACAATCTAAAATTACATTAAACTAATCAGAAACACAATCATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATCACCATCAAAAAGCGAAATCAACGCAAtcac                                                                                                                    >  2:386890/1‑145 (MQ=255)
                           gAAAAATGGTGGTTACCAAATACAACAAGCACAATCTAAAATTGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATtata                                                                                                                   >  1:67545/1‑148 (MQ=255)
                             aaaaTGGTGGTTACCAAATACAACAAGCACAATCTAAAATTGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGCCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATaaa                                                                                                                 <  1:935065/148‑1 (MQ=255)
                                aTGGTGGTTACCAAATACAACAAGCACAATCTAAAATTGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACa                                                                                                              >  1:306192/1‑148 (MQ=255)
                                   gtggtTACCAAATACAACAAGCACAATCTAAAATTGCATTAAACTTCTCCGCAGCTGTATTAGCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATg                                                                                                           <  1:928143/148‑1 (MQ=255)
                                   gtggtTACCAAATACAACAAGCACAATCTAAAATTGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATGATAAAACAATg                                                                                                           <  2:364044/148‑1 (MQ=255)
                                   gtggtTACCAAATACAACAAGCACAAGCTAAAATTGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATg                                                                                                           <  2:778938/148‑1 (MQ=255)
                                      gtTACCAAATACAACAAGCACAATCTAAAATTGCATTAAACTTATCTGGAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGttt                                                                                                        <  2:843278/148‑1 (MQ=255)
                                        tACCAAATACAACAAGCACAATCCAAAAATGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACACGGTTTaa                                                                                                      >  1:512066/1‑148 (MQ=255)
                                           cAAATACAACAAGCACAATCTAAAATTGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTc                                                                                                   >  2:173230/1‑148 (MQ=255)
                                            aaaTACAACAAGCACAATCTAAAATTGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAATGCGAAATCAACGCAATTATAAAAAAATGTTTAGGttt                                                                                                  >  2:466087/1‑146 (MQ=255)
                                                   acaatcacaatcTAAAATTGCATTACACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACaa                                                                                           <  2:821921/148‑1 (MQ=255)
                                                       gCACAATCTAAAATTGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAacac                                                                                       <  2:804497/148‑1 (MQ=255)
                                                          caATCTAAAATTGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCt                                                                                    <  2:3878/148‑1 (MQ=255)
                                                          caATCTAAAATTGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCt                                                                                    <  2:926596/148‑1 (MQ=255)
                                                          caATCTAAAATTGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGAGCTTAATGAAAGTAAGTCGTACTCGACATTACCATATAAAAGCGAAATGAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCt                                                                                    >  2:3758/1‑148 (MQ=255)
                                                            aTCTAAAATTGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTa                                                                                  <  1:797337/148‑1 (MQ=255)
                                                            aTCTAAAATTGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTa                                                                                  >  1:715000/1‑148 (MQ=255)
                                                            aTCTAAAATTGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAATCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAAGGTTTAAGTCTTCCACAAACACGCTTa                                                                                  >  1:609598/1‑148 (MQ=255)
                                                            aTCTAAAATTGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAATTCTGAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTa                                                                                  <  1:472547/148‑1 (MQ=255)
                                                            aTCTAAAATTGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTATTAGTCCTGAAGTAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTa                                                                                  >  1:524755/1‑148 (MQ=255)
                                                               tAAAATTGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGa                                                                               >  1:648353/1‑148 (MQ=255)
                                                               tAAAATTGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGa                                                                               >  1:565446/1‑148 (MQ=255)
                                                                  aaTTGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGaaaa                                                                            >  2:177037/1‑148 (MQ=255)
                                                                    ttGCATTAAACTTATCTGACACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAAtt                                                                          >  2:360065/1‑148 (MQ=255)
                                                                    ttGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAGAATCTAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAAtt                                                                          <  2:405034/148‑1 (MQ=255)
                                                                    ttGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAAtt                                                                          <  1:570225/148‑1 (MQ=255)
                                                                    ttGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAAtt                                                                          >  1:954293/1‑148 (MQ=255)
                                                                     tGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTg                                                                         <  1:32807/148‑1 (MQ=255)
                                                                     tGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTg                                                                         <  2:765241/148‑1 (MQ=255)
                                                                      gCATTAAACCTACCCGAAACACAAGTATCATCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGc                                                                        <  1:848548/148‑1 (MQ=255)
                                                                        cttAAACTTATCGGAAACACAATTATCAGCCTTATTTGTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGCtt                                                                      >  2:582006/2‑148 (MQ=255)
                                                                        aTTAAACTTATGTGAAACACAATAATCAGCCTTATGTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGCtt                                                                      >  2:582178/1‑148 (MQ=255)
                                                                        aTTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTTTTTTTTTTTGAAAGTCAGTAGTACACGACATTACCATATAAATGCGAAGTCAACGCACTTATAAAACTTTGTTTTAGTCTTCTACAAACACGATTAAGAAAATTGCtt                                                                      >  2:406753/1‑148 (MQ=255)
                                                                        aTTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGCtt                                                                      >  1:480250/1‑148 (MQ=255)
                                                                        aTTAAACTTATCTGAAACACAATTATAAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGCtt                                                                      >  2:416204/1‑148 (MQ=255)
                                                                          tAAACTTCTCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTATTCCACAAACACGCTTAAGAAAATTGCTTaa                                                                    <  1:484073/148‑1 (MQ=255)
                                                                             aCTTATCTGAAACACAATTATCAGCCTTATTTTTAGTTCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGCTTAAACg                                                                 >  2:339140/1‑148 (MQ=255)
                                                                               ttATCTGAAACACAATTATCAGCCTTATTTTTAGTGATTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATGGCTTAAACgaa                                                               >  2:782887/1‑146 (MQ=255)
                                                                                tATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGCTTAAACGCAt                                                              <  2:67545/148‑1 (MQ=255)
                                                                                     gAACCACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATACAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGCTTAAACGCATGGACt                                                         <  1:657433/148‑1 (MQ=255)
                                                                                     gAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGCTTAAACGCATGGACt                                                         <  1:189589/148‑1 (MQ=255)
                                                                                     gAAACACAATTATCAGCCTTATTGTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGCTTAAACGCATGGACt                                                         <  1:278815/148‑1 (MQ=255)
                                                                                      aaaCACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGCTTAAACGCATGGACtt                                                        <  1:339140/148‑1 (MQ=255)
                                                                                       aaCACAATTATCATCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGCTTAAACGCATGGACttt                                                       <  1:700602/148‑1 (MQ=255)
                                                                                       aaCACAATTATCAGCCTTATTTTTAGCGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGCTTAAACGCATGGACttt                                                       <  1:392702/148‑1 (MQ=255)
                                                                                       aaCACAATTATCAGCCTTATTTTTACTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACCAAGTTGAAGTCTTCCACAAACACGCTTAAGAAAATTGCTTAAACGCATGGACttt                                                       <  1:193544/148‑1 (MQ=255)
                                                                                       aaCACAATTATCAGCATTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTCAGAAAATTGCTTCAACGCATGGACttt                                                       <  1:621305/148‑1 (MQ=255)
                                                                                        acacAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGCTTAAACGCATGGACtttt                                                      <  2:938697/148‑1 (MQ=255)
                                                                                        acacAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGCTTAAACGCATGGACtttt                                                      <  2:2777/148‑1 (MQ=255)
                                                                                        acacAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGCTTAAACGCATGGACtttt                                                      <  1:702622/148‑1 (MQ=255)
                                                                                        acacAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGCTTAAACGCATGGACtttt                                                      <  1:679377/148‑1 (MQ=255)
                                                                                        acacAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGCTTAAACGCATGGACtttt                                                      <  2:144990/148‑1 (MQ=255)
                                                                                             aTTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGCTTAAACGCATGGACTTTTATAtt                                                 <  1:825581/148‑1 (MQ=255)
                                                                                                 tCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGCTTAAACGCATGGACTTTTATATTAAAt                                             <  1:402992/148‑1 (MQ=255)
                                                                                                 cccgctgtATGTTTAGTGCGTAATGAAAGTCAGGCGTACTCGACATTACCATATAAAAGCGAAACCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGCTTAAACGCATGGACTTTTATATTAAAt                                             <  1:466807/141‑1 (MQ=255)
                                                                                                  cAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAACCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGCTTAAACGCATGGACTTTTATATTAAAtt                                            <  1:382848/148‑1 (MQ=255)
                                                                                                         gtttttAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGCTTAAACGCATGGACTTTTATATTAAATTTGATGac                                     <  2:604541/147‑1 (MQ=255)
                                                                                                         aTTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGCTTAAACGCATGGACTTTTATATTAAATTTGATGac                                     >  1:862227/1‑148 (MQ=255)
                                                                                                           ttttAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGCTTAAACGCATGGACTTTTATATTAAATTTGATGacac                                   <  2:16556/148‑1 (MQ=255)
                                                                                                           ttttAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGCTTAAACGCATGGACTTTTATATTAAATTTGATGacac                                   <  2:720994/148‑1 (MQ=255)
                                                                                                              tAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGCTTAAACGCATGGACTTTTATATTAAATTTGATGAcacaca                                <  2:468796/148‑1 (MQ=255)
                                                                                                              tAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGCTTAAACGCATGGACTTTTATATTAAATTTGATGAcacaca                                <  2:638016/148‑1 (MQ=255)
                                                                                                               aGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCAGACAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGCTTAAACGCATGGACTTTTATATTAAATTTGATGACACacaa                               <  1:922492/148‑1 (MQ=255)
                                                                                                                gtccTTAATCAAACTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGCTTAAACGCATGGACTTTTATATTAAATTTGATGACACacaac                              <  1:837622/145‑1 (MQ=255)
                                                                                                                gTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAACCACGCTTAAGAAAATTGCTTAAACGCATGGACTTTTATATTAAATTTGATGACACacaac                              <  1:344775/148‑1 (MQ=255)
                                                                                                                  gCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGCTTAAACGCATGGACTTTTATATTAAATTTGATGACACACAACat                            >  2:925309/1‑148 (MQ=255)
                                                                                                                    ttACTGAAAGCCAGGCGTACTCGACATTACCATACAAATGCTAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGCTTAAACGCATGGACTTTTATATTAAATTTGATGACACACAACatat                          <  2:769194/148‑1 (MQ=255)
                                                                                                                    ttAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGCTTAAACGCATGGACTTTTATATTAAATTTGATGACACACAACatat                          <  1:273788/148‑1 (MQ=255)
                                                                                                                    ttAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGCTTAAACGCATGGACTTTTATATTAAATTTGATGACACACAACatat                          <  1:878447/148‑1 (MQ=255)
                                                                                                                    ttAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAACTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGCTTAAACGCATGGACTTTTATATTAAATTTGATGACACACAACatat                          <  1:719841/148‑1 (MQ=255)
                                                                                                                      aaTGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGCTTAAACGCATGGACTTTTATATTAAATTTGATGACACCCAACATATGa                        >  2:317787/1‑148 (MQ=255)
                                                                                                                        tGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGCTTAAACGCATGGACTTTTATATTAAATTTGATGACACACAACATATGaca                      >  1:185891/1‑148 (MQ=255)
                                                                                                                         gAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGCTTAAACGCATGGACTTTTATATTAAATTTGATGACACACAACATATGacac                     >  1:371692/1‑148 (MQ=255)
                                                                                                                         gAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGCTTAAACGCATGGACTTTTATATTAAATTTGATGACACACAACATATGacac                     >  1:915612/1‑148 (MQ=255)
                                                                                                                          aaaGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGCTTAAACGCATGGACTTTTATATTAAATTTGATGACACACAACATATGACACt                    <  2:649865/148‑1 (MQ=255)
                                                                                                                           aaGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGCTTAAACGCATGGACTTTTATATTAAATTTGATGACACACAACATATGACACTc                   >  2:424597/1‑148 (MQ=255)
                                                                                                                                            cATTACCATATAAAGGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGCTTAAACGCATGGACTTTTATATTAAATTTGATGACACACAACATATGACACTCCGAATGCTGTTTTCCGa  >  1:620810/1‑148 (MQ=255)
                                                                                                                                                   |                                                                                                                                            
AGGTGTTAAAATTTATGCGCATTATGGGAAAAATGGTGGTTACCAAATACAACAAGCACAATCTAAAATTGCATTAAACTTATCTGAAACACAATTATCAGCCTTATTTTTAGTGCTTAATGAAAGTCAGTCGTACTCGACATTACCATATAAAAGCGAAATCAACGCAATTATAAAACAATGTTTAAGTCTTCCACAAACACGCTTAAGAAAATTGCTTAAACGCATGGACTTTTATATTAAATTTGATGACACACAACATATGACACTCCCAATGCTGTTTTCCGA  >  CP000730/2431098‑2431385

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.