Predicted mutation
evidence seq id position mutation annotation gene description
RA CP000730 2,856,087 T→A P80P (CCT→CCA USA300HOU_2698 → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007302,856,0870TA100.0% 319.0 / NA 100P80P (CCT→CCAUSA300HOU_2698hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base A (52/48);  total (52/48)

CTAATGGAGATGCATGGCGTTGGTCCTAAAGCTATATCAATATTGGAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCTAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCGCTTTGACATATACGGACCTCAAATATTAATTCAAGAACTA  >  CP000730/2855944‑2856231
                                                                                                                                               |                                                                                                                                                
ctAATGGAGATGCATGGCGTTGGTCCTAAAGCTATATCAATATTGGAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAAc                                                                                                                                              <  1:915074/148‑1 (MQ=255)
 tAATGGAGATGCATGGCGTTGGTCCTAAAGCTATATCAATATTGGAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACg                                                                                                                                             >  1:715188/1‑148 (MQ=255)
 tAATGGAAATGCATGGCGTTGGTCCTACAGCTATATCAATATTGGAACAAGCTTTATTTCAGCCCCAAATACATTTTATAACGGAAGTTCAGTCATCATTACCATTTAAGTTAACAGGAGATGTGTCATGCAATTATGCTCCAAAAct                                                                                                                                             >  2:228858/1‑147 (MQ=255)
    tGGAGATGCATGGCGTTGGTCCTAAAGCTATATCAATATTGGAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGCTGTGTCATGCAATCATGCGCCAAAACGTca                                                                                                                                          >  2:618957/1‑148 (MQ=255)
    tGGAGATGCATGGCGTTGGTCCTAAAGCTATATCAATATTGGAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTca                                                                                                                                          >  1:3019/1‑148 (MQ=255)
     ggAGATGCATGGCGTTGGTCCTAAAGCTATATCAATATTGGAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTcaa                                                                                                                                         >  2:221734/1‑148 (MQ=255)
      gagaTGCATGGCGTTGGTCCTAAAGCTATATCAATATTGGAACAAGCTTTATTTCAACACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTcaac                                                                                                                                        >  2:835250/1‑148 (MQ=255)
       agaTGCATGGCGTTGGTCCTAAAGCTATATCAATATTGGAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTAAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTAATGCAATCATGCGCAAAAACGTcaaca                                                                                                                                       >  2:114807/1‑148 (MQ=255)
        gaTGCATGGCGTTTGTCCTAAAGCTATATCAATATTGGAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTcaacaa                                                                                                                                      <  2:753534/148‑1 (MQ=255)
        gaTGCATGGCATTGGTCCTAAAGCTATATCAATATTGGAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTcaacaa                                                                                                                                      <  2:841096/148‑1 (MQ=255)
        aaTGCATGGCGTTGGTCCTAAAGCTATATCAATATTGGAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTcaacaa                                                                                                                                      <  2:841524/147‑1 (MQ=255)
         aTGCATGGCGTTGGTCCTAAAGCTATATCAATATTGGAACAAGCTTTATTTCAGCACCAACTCCATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAAAAGGAGATGTGTCATGCATTCATGCGCCAAAACGTCAACaaa                                                                                                                                     >  1:201503/1‑148 (MQ=255)
         aTGCATGGCGTTGGTCCTAAAGCTATATCAATATTGGAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACaaa                                                                                                                                     <  2:340949/148‑1 (MQ=255)
         aTGCATGGCGTTGGTCCTAAAGCTATATCAATATTGGAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACaaa                                                                                                                                     <  1:97732/148‑1 (MQ=255)
             aTGGCGTTGGTCCTAAAGCTATATCAATATTGGAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTCCCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGaa                                                                                                                                 >  1:578550/1‑147 (MQ=255)
                 ggTTGGTCCTTAATCTATATCAAGATTGGAAAAATCTTTATTCCAGCACCAATTACATTTTAAAACGGAAGTTTAGTCATCATTAACTTTTAAGTTAACAGTAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGAGAGAt                                                                                                                             <  2:110517/147‑1 (MQ=255)
                 ctttGGTCCTAAAGCTATATCAATATTGAAACAAGTGATAGTTTAGTACCAACTACATGTTAAAAGGGAATTTTAGTCATCATTACCTTTTAAGTGAACAGCAGATGTGTCATGCAATCATGCGCCAAAGCGTGAACAAGTGATAGAt                                                                                                                             <  2:140876/146‑1 (MQ=255)
                 ccttGGTCCTAAAGCTATATCAATATTGGAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGAt                                                                                                                             <  2:287973/146‑1 (MQ=255)
                 cGTTGGTCCTAAAGCTATATCAATATTGGAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGAt                                                                                                                             <  1:260536/148‑1 (MQ=255)
                        ccTAAAGCTATATCAATATTGGAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAg                                                                                                                      <  1:89557/148‑1 (MQ=255)
                         cTAAAGCTATATCAATATTGGAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGCGGGTGCGGGCAATAGCGAACCACAACGTCAACAAATGATAGATTTTATAgt                                                                                                                     >  1:225865/1‑148 (MQ=255)
                              gCTATATCAATATTGGAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAACTGCAGTCATCATTACCTTTTAAGGTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTa                                                                                                                >  2:702705/1‑148 (MQ=255)
                                 atatCAATATTGGAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATAATAGATGTTATAggtattccaa                                                                                                             >  2:166633/1‑139 (MQ=255)
                                   atCAATATTGGAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACGGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATTATAGATTTTATAGTTGTTAcagca                                                                                                           <  2:380972/148‑1 (MQ=255)
                                   atCAATATTGGAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTAcagca                                                                                                           <  2:629043/148‑1 (MQ=255)
                                     cAATATTGGAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACagcagc                                                                                                         >  2:675412/1‑148 (MQ=255)
                                       atatTGGAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCAt                                                                                                       >  2:729169/1‑148 (MQ=255)
                                           tGGAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGa                                                                                                   >  2:567204/1‑148 (MQ=255)
                                            gtaataaGGTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTGCAGTCATCCTCTTTTTTCAACTTAACAGGGGATGGGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGat                                                                                                  <  1:721501/143‑1 (MQ=255)
                                            ggAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATCGATTTTATAGTTGCTACAGCAGCATTAGat                                                                                                  >  1:268428/1‑148 (MQ=255)
                                            ggAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGat                                                                                                  >  1:412547/1‑148 (MQ=255)
                                            ggAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGat                                                                                                  >  1:870366/1‑148 (MQ=255)
                                               aCAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACCGGAGCTGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGctaat                                                                                               >  2:452263/1‑146 (MQ=255)
                                                cAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATATTTGTTACAGCAGCATTAGATATTg                                                                                              >  2:645972/1‑148 (MQ=255)
                                                cAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTg                                                                                              >  2:145467/1‑148 (MQ=255)
                                                cAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGATCAGACAACACTACCGTTGAAGTGACCAGTAGAGTTGTCATTCAATCATGCGCCAAGACGTCATCCAGTGATAGGTTTGATAGTGCTGACAGCAGCAGTAGATAttt                                                                                              <  2:251817/148‑2 (MQ=255)
                                                 aaGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGa                                                                                             >  2:343892/1‑148 (MQ=255)
                                                 aaGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGa                                                                                             >  2:925382/1‑148 (MQ=255)
                                                      ttATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAattat                                                                                        <  1:172944/148‑1 (MQ=255)
                                                      ttATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAattat                                                                                        >  2:480469/1‑148 (MQ=255)
                                                      taaTTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAattat                                                                                        <  1:466083/146‑1 (MQ=255)
                                                       tATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAattatt                                                                                       >  1:384277/1‑148 (MQ=255)
                                                            cAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGtt                                                                                  >  2:659268/1‑148 (MQ=255)
                                                             aGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTc                                                                                 >  2:930792/1‑148 (MQ=255)
                                                               cACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCAc                                                                               >  2:53970/1‑148 (MQ=255)
                                                                aCCAACTAAATTTTAAAACGGTAGTTCCGTAATCATTNCCGTTTAAGTTATCAGGAGATGTGTTATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGCTATTGAATTATTACGTTCACt                                                                              <  2:679038/148‑1 (MQ=255)
                                                                   aattACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGt                                                                           <  2:202141/145‑1 (MQ=255)
                                                                    aCTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGtt                                                                          <  2:602142/148‑1 (MQ=255)
                                                                    aCTACATTCTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCATCATTAGATATTGAATTATTACGTTCACTGGtt                                                                          <  2:703482/148‑1 (MQ=255)
                                                                      tACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTCAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTac                                                                        <  2:207432/148‑1 (MQ=255)
                                                                        cATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTacaa                                                                      <  1:121115/148‑1 (MQ=255)
                                                                           tttAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGGTCACTGGTTACAACAg                                                                   >  1:783796/1‑148 (MQ=255)
                                                                            ttAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTATGTTAATTggacacagcaaa                                                                  >  1:716124/1‑138 (MQ=255)
                                                                            ttAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGa                                                                  >  1:38869/1‑148 (MQ=255)
                                                                            ttAAAACGGAAGTTCAGTCATCATTACCTTCTCAGCAACCAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGa                                                                  >  1:482079/1‑148 (MQ=255)
                                                                               aaaCGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAatt                                                               >  2:68011/1‑148 (MQ=255)
                                                                                 aCGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTCCAAAGGAattta                                                             >  2:880451/1‑148 (MQ=255)
                                                                                 aCGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAatttt                                                             >  2:983797/1‑147 (MQ=255)
                                                                                 aCGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAattta                                                             <  2:498237/148‑1 (MQ=255)
                                                                                  cGGAAGTTCAGTCATCATTACGTTTTGAGTTAGCAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAatttat                                                            >  1:546788/1‑148 (MQ=255)
                                                                                  cGGAAGTTCAGTCATCATTACCTTTTAAGTAAAAAGGGTATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAatttat                                                            >  2:703870/1‑148 (MQ=255)
                                                                                   ggAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAatttatt                                                           <  2:706952/148‑1 (MQ=255)
                                                                                   ggAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAatttatt                                                           <  1:586482/148‑1 (MQ=255)
                                                                                   ggAAGTTCAGTCATCATTACCTTTGAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAatttatt                                                           <  2:820208/148‑1 (MQ=255)
                                                                                         tCAGTCATCCTTACCTTTTAAGTTAACTGGAGATGTGTCATGCAATCATGCGCCAACACGTCAACAAATGATAGATTTTATAGTTGTTCCAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCt                                                     >  2:608126/1‑148 (MQ=255)
                                                                                              catcatTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTccc                                                <  1:221734/148‑1 (MQ=255)
                                                                                              catcatTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATAATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTccc                                                >  2:409576/1‑148 (MQ=255)
                                                                                              catcatGACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCAAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATGAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTccc                                                <  1:38555/148‑1 (MQ=255)
                                                                                               atcatTACCTTTTAAGTTAAAAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTGGGTCTGTCCCt                                               <  2:687615/148‑1 (MQ=255)
                                                                                                    tACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCg                                          <  1:130511/148‑1 (MQ=255)
                                                                                                      ccTTTTAAGTTAACAGGTTATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCGCt                                        <  1:618957/148‑1 (MQ=255)
                                                                                                       gatggaaGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCGCtt                                       <  2:244628/143‑1 (MQ=255)
                                                                                                       cTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCGCtt                                       <  2:436735/148‑1 (MQ=255)
                                                                                                        ttttAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCGCttt                                      <  2:402606/148‑1 (MQ=255)
                                                                                                        ttttAAGCTAACAGTAGAGGTGTCATGCAATCATGCGCCAAACCGTCAACAAATGCTAGATTTTATAGGTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCGCttt                                      <  2:598535/148‑1 (MQ=255)
                                                                                                         tttAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCGCTTTg                                     <  1:930792/148‑1 (MQ=255)
                                                                                                         tttAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCGCTTTg                                     <  1:404057/148‑1 (MQ=255)
                                                                                                         tttAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTGATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCGCTTTg                                     <  2:431998/148‑1 (MQ=255)
                                                                                                         tttAAGGTAACAGGAGATTTGTCATGCAATCATGCGCCAAAACGGCAACAAATTATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATGACGGTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCGCTTTg                                     <  1:203157/148‑1 (MQ=255)
                                                                                                          ttAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCGCTTTGa                                    >  2:42535/1‑148 (MQ=255)
                                                                                                          ttAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCGCTTTGa                                    >  1:965186/1‑148 (MQ=255)
                                                                                                          ttAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCGCTTTGa                                    >  2:507728/1‑148 (MQ=255)
                                                                                                           aaaGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCGCTTTGAc                                   >  2:259328/2‑148 (MQ=255)
                                                                                                            aaGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCGCTTTGACa                                  >  2:8607/1‑148 (MQ=255)
                                                                                                                 aaCAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCGCTTTGACATATAc                             >  2:463427/1‑148 (MQ=255)
                                                                                                                 aaCAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCGCTTTGACATAAAc                             >  2:378163/1‑148 (MQ=255)
                                                                                                                  aCAGGAGCTGTGTCATGCAATCATGCGCCAAAACGTCAACCAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCCGGCCGCTTTGACATATACg                            <  1:702717/148‑1 (MQ=255)
                                                                                                                   cAGGCGGTGTGTCATGCAATCATGCTCCAAAACGTCAACAAATGTTAGAGTTTATAGTTGTTACAGCAGCATTAGATATTGGATTATTACGGTCACTGGTTACAACAGAATTTATTTGGTCTGGGCCTGGCCGCTTTGACATATACgg                           <  1:496919/148‑1 (MQ=255)
                                                                                                                   cAGGAGATGTGTCATGCAATCGTGCGGCAAAATGTCAACAAATGATAGATTGTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCGCTTTGACATATACgg                           >  1:544875/1‑148 (MQ=255)
                                                                                                                   cAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCGCTTTGACATATACgg                           <  1:925382/148‑1 (MQ=255)
                                                                                                                     ggAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCGCTTTGACATATACGGAc                         >  1:217552/1‑148 (MQ=255)
                                                                                                                     ggAGATGTGTCATGCAATCATGCGCCAAAACGTCAAAAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCGCTTTGACATATACGGAc                         >  1:142253/1‑148 (MQ=255)
                                                                                                                      gagaTGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGCTCAAACAGCATCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCGCTTTGACATATACGGAcc                        <  1:721170/148‑1 (MQ=255)
                                                                                                                       agaTGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCGCTTTGACATATACGGACCt                       >  2:379918/1‑148 (MQ=255)
                                                                                                                       agaTGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTCTATAGCTGTTACAGCCACATTAGATATTAAATATTTACGTTCAGTGGTTAAAGCAGAATTTATTTGGGTTGTCCCTGGCCCCTTTGACATATACGGAccc                       >  2:726570/1‑147 (MQ=255)
                                                                                                                        gaTGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCGCTTTGACATATACGGACCTc                      <  1:404331/148‑1 (MQ=255)
                                                                                                                          tgtgTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCGCTTTGACATATACGGACCTCaa                    <  1:948537/148‑1 (MQ=255)
                                                                                                                               cATGCAATCATGCGCCAAAACGTAAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCGCTTTGACATATACGGACCTCAAATAtt               >  1:496104/1‑148 (MQ=255)
                                                                                                                                     aTCATGCGCCAAAACGTCAACAAATGCTAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTCCACTGGTTACAACAGAATTTATTTGTTCTGTCACGGGCTTCTTTGACATATACGGACCTCTAATATTAATTCa         <  1:729169/148‑1 (MQ=255)
                                                                                                                                            gcCAAAACGTCAACGAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCGCTTTGACATATACGGACCTCAAATATTAATTCAAGAACTa  <  2:225865/148‑1 (MQ=255)
                                                                                                                                               |                                                                                                                                                
CTAATGGAGATGCATGGCGTTGGTCCTAAAGCTATATCAATATTGGAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCTAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCGCTTTGACATATACGGACCTCAAATATTAATTCAAGAACTA  >  CP000730/2855944‑2856231

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: