| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 802131 = | 97 (1.080) | 3 (0.040) | 3/254 | 15.4 | 3.1% | intergenic (+372/+252) | USA300HOU_0748/dgkA1 | hypothetical protein/possible diacylglycerol kinase |
| ? | CP000730 | 802180 = | 98 (1.190) | intergenic (+421/+203) | USA300HOU_0748/dgkA1 | hypothetical protein/possible diacylglycerol kinase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGTTTCAAAAACAGACATATAATTTTGGCGCATGCCACTAAAATGATTGATGTTGTATTTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/802280‑802131‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatccgatttTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGTTTTTGAAACAGGGTAATAGCTTAAAGCTAATAAAAACGAATATAAGGTG > CP000730/802180‑802319 TGTTTCAAAAACAGACATATAATTTTGGCGCATGCCACTAAAATGATTGATGTTGTATTTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTC < 1:655234/141‑1 GTTTCAAAAACAGACATATAATTTTGGCGCATGCCACTAAAATGATTGATGTTGTATTTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCA < 2:646868/141‑1 GTTTCAAAAACAGACATATAATTTTGGCGCATGCCACTAAAATGATTGATGTTGTATTTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATACTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCA < 2:666853/141‑1 TTTCAAAAACAGACATATAATTTTGGCGCATGCCACTAAAATGATTGAAGTTGTATTTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATAGGATGACGTGTAATCTGCCATAGATTAACACATTCAT > 2:315822/1‑141 TTCAAAAACAGACATATAATTTTGGCGCATGCCACTAAAATGATTGATGTTGTATTTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATC < 1:327876/141‑1 TCAAAAACAGACATATAATTTTGGCGCATGCCACTAAAATGATTGATGTTGTATTTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCC < 1:678540/141‑1 CAAAAACAGACATATAATTTTGGCGCATGCCACTAAAATGATTGATGTTGTATTTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCG > 2:962099/1‑141 AAAAACAGACATATAATTTTGGCGCATGCCACTAAAATGATTGATGTTGTATTTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGA < 1:516644/141‑1 AAAAACAGACATATAATTTTGGCGCATGCCACTAAAATGATTGATGTTGTATTTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGA < 2:560074/141‑1 AAAAACAGACATATAATTTTGGCGCATGCCACTAAAATGATTGATGTTGTATTTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGA > 2:302192/1‑141 AAAACAGACATATAATTTTGGCGCATGCCACTAAAATGATTGATGTTGTATTTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGAT > 1:81545/1‑141 AAAACAGACATATAATTTTGGCGCATGCCACTAAAATGATTGATGTTGTATTTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGAT > 2:737773/1‑141 AAACAGACATATAATTTTGGCGCATGCCACTAAAATGATTGATGTTGTATTTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATT > 1:943773/1‑141 AACAGACATATAATTTTGGCGCATGCCACTAAAATGATTGATGTTGTATTTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTT > 1:303818/1‑141 AAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTG > 1:149351/1‑141 ATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGTTTTTGAAA > 2:301626/1‑141 TGACATGTAATCTGCCATAGATTAACACATGCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATATTAGTGGCATGCGCCAAAATTATATGTCTGTTTTTGAAAC > 1:688490/1‑141 TCATCCGATTTTTTATAGTATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGTTTTTTAAACAGGGTAATAGCTTAAAGCTAATAAAAACGA < 1:465066/141‑1 ATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGTTTTTGAAACAGGGTAATAGCTTAAAGCTAATAAAAACGAAT < 1:421429/141‑1 CGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGTTTTTGAAACAGGGTAATAGCTTAAAGCTAATAAAAACGAATATA < 2:351347/141‑1 GATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGTTTTTGAAACAGGGTAATAGCTTAAAGCTAATAAAAACGAATATAA > 2:895504/1‑141 TTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGTTTTTGAAACAGGGTAATAGCTTAAAGCTAATAAAAACGAATATAAGG < 1:281364/141‑1 TTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGTTTTTGAAACAGGGTAATAGCTTAAAGCTAATAAAAACGAATATAAGG > 1:752338/1‑141 TTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGTTTTTGAAACAGGGTAATAGCTTAAAGCTAATAAAAACGAATATAAGG > 1:802903/1‑141 TTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGTTTTTGAAACAGGGTAATAGCTTAAAGCTAATAAAAACGAATATAAGGTG < 1:98848/141‑1 TGTTTCAAAAACAGACATATAATTTTGGCGCATGCCACTAAAATGATTGATGTTGTATTTTAAATCATAGTGGTTTATGCGTCTTTTTCAAATTCTATAAAAAATCGGATGACGTGTAATCTGCCATAGATTAACACATTCATCCGATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/802280‑802131‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatccgatttTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGTTTTTGAAACAGGGTAATAGCTTAAAGCTAATAAAAACGAATATAAGGTG > CP000730/802180‑802319 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |