BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2504852 =	119 (1.330)	45 (0.620)	23/222	4.3	31.7%	intergenic (+156/+248)	USA300HOU_2365/gltT	hypothetical protein/DAACS family dicarboxylate/amino acid:sodium (Na+) or proton (H+) symporter
*	?	CP000730	= 2505034	98 (1.360)	45 (0.620)	23/222	4.3	31.7%	intergenic (+338/+66)	USA300HOU_2365/gltT	hypothetical protein/DAACS family dicarboxylate/amino acid:sodium (Na+) or proton (H+) symporter
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 120 total aligned reads displayed.

CAAATTTTAGTTGCCATCAAGGTATATACGAGTAAAAGCAGCGGTAAGTTGATTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGTC  >  CP000730/2504712‑2504990

cAAATTTTAGTTGCCATCAAGGTATATACGAGTAAAAGCAGCGGTAAGTTGATTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑g                                                                                                                                             >  1:437573/1‑141 (MQ=255)

 aaaTTTTAGTTGCCATCAAGGTATATACGAGTAAAAGCAGCGGTAAGTTGATTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑gc                                                                                                                                            >  2:83544/1‑141 (MQ=255)

   aTTTTAGTTGCCATCAAGGTATATACGAGTAAAAGCAGCGGTAAGTTGATTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑gcgc                                                                                                                                          <  1:459537/141‑1 (MQ=255)

     tttAGTTGCCATCAAGGTATATACGAGTAAAAGCAGCGGTAAGTTGATTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCgcat                                                                                                                                        >  2:863816/1‑141 (MQ=255)

      ttAGTTGCCATCAAGGTATATACGAGTAAAAGCAGCGGTAAGTTGATTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCgcatg                                                                                                                                       >  1:628213/1‑141 (MQ=255)

       tAGTTGCCATCAAGGTATATACGAGTAAAAGCAGCGGTAAGTTGATTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCgcatgc                                                                                                                                      >  2:344707/1‑141 (MQ=255)

       tAGTTGCCATCAAGGTATATACGAGTAAAAGCAGCGGTAAGTTGATTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCgcatgc                                                                                                                                      >  1:541335/1‑141 (MQ=255)

          ttGCCATCAAGGTATATACGAGTAAAAGCAGCGGTAAGTTGATTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATa                                                                                                                                   >  1:254107/1‑141 (MQ=255)

          ttGCCATCAAGGTATATACGAGTAAAAGCAGCGGTAAGTTGATTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATa                                                                                                                                   >  2:747711/1‑141 (MQ=255)

             ccATCAAGGTATATACGAGTAAAAGCAGCGGTAAGTTGATTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAACTACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTCCGCTTT‑GCGCACGCCTacaa                                                                                                                                >  2:868188/1‑141 (MQ=255)

             ccATCAAGGTATATACGAGTAAAAGCAGCGGTAAGTTGATTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATaaaa                                                                                                                                >  1:500140/1‑141 (MQ=255)

                  aaGGTATATACGAGTAAAAGCAGCGGTAAGTTGATTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGcccc                                                                                                                           <  2:109114/141‑1 (MQ=255)

                  aaGGTATATACGAGTAAAAGCAGCGGTAAGTTGATTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGcccc                                                                                                                           >  1:509450/1‑141 (MQ=255)

                  aaGGTATATACGAGTAAAAGCAGCGGTAAGTTGATTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAAcccc                                                                                                                           >  1:327129/1‑141 (MQ=255)

                    ggTATATACGAGTAAAAGCAGCGGTAAGTTGATTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTa                                                                                                                         <  2:377982/141‑1 (MQ=255)

                     gTATATACGAGTAAAAGCAGCTGTAAGTTGATTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTaa                                                                                                                        <  1:7701/141‑1 (MQ=255)

                     gTATATACGAGTAAAAGCAGCGGTAAGTTGATTTCCAATTTGGAATCATTTTACTGCCGCTCTTTATATTTGAACTACTTTCGGAGGGAAGAGCGCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTaa                                                                                                                        >  1:190576/1‑141 (MQ=38)

                      tatataCGAGTAAAAGCAGCGGTAAGTTGATTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTaac                                                                                                                       >  2:901877/1‑141 (MQ=255)

                       atataCGAGTAAAAGCAGCGGTAAGTTGATTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTaaca                                                                                                                      >  2:660066/1‑141 (MQ=255)

                        tataCGAGTAAAAGCAGCGGTAAGTTGATTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTaacaa                                                                                                                     <  1:291843/141‑1 (MQ=255)

                         ataCGAGTAAAAGCAGCGGTAAGTTGATTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTaacaac                                                                                                                    >  1:40480/1‑141 (MQ=255)

                          taCGAGTAAAAGCAGCGGTAAGTTGATTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAAcc                                                                                                                   >  1:207741/1‑141 (MQ=255)

                            cGAGTAAAAGCAGCGGTAAGTTGATTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTg                                                                                                                 >  2:364439/1‑141 (MQ=255)

                               gTAAAAGCAGCGGTAAGTTGATTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAgg                                                                                                              <  1:247305/141‑1 (MQ=255)

                                  aaaGCAGCGGTAAGTTGATTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑Tcc                                                                                                          >  2:751578/1‑140 (MQ=255)

                                   aaGCAGCGGTAAGTTGATTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCAc                                                                                                         >  1:50521/1‑141 (MQ=255)

                                    agcagcGGTAAGTTGATTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACt                                                                                                        >  1:841884/1‑141 (MQ=255)

                                    agcagcGGTAAGTTGATTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCACCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACt                                                                                                        >  1:702334/1‑141 (MQ=255)

                                      cagcGGTAAGTTGATTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTgc                                                                                                      >  2:478516/1‑141 (MQ=255)

                                      cagcGGTAAGTTGATTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTgc                                                                                                      >  2:478524/1‑141 (MQ=255)

                                      cagcGGTAAGTTGATTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTgc                                                                                                      >  2:664845/1‑141 (MQ=255)

                                       agcGGTAAGTTGATTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTgcg                                                                                                     >  2:51233/1‑141 (MQ=255)

                                             aaGTTGATTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCACATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAGAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCgg                                                                                               <  1:504774/141‑1 (MQ=255)

                                              aGTTGATTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGt                                                                                              >  2:714312/1‑141 (MQ=255)

                                               gTTGATTTCCAATTTGGAATCATTTTACTGCTGCTCTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGtt                                                                                             >  1:844393/1‑141 (MQ=255)

                                                ttGATTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTc                                                                                            >  2:841450/1‑141 (MQ=255)

                                                 tGATTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCg                                                                                           <  2:933463/141‑1 (MQ=255)

                                                 tGATTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTAATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCg                                                                                           >  1:490720/1‑141 (MQ=255)

                                                      tCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTgc                                                                                      >  2:30128/1‑141 (MQ=255)

                                                       ccAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTgcg                                                                                     <  2:664551/141‑1 (MQ=255)

                                                        cAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGATCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTgcgc                                                                                    >  2:10935/1‑141 (MQ=255)

                                                         aaTTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCt                                                                                   <  1:714312/141‑1 (MQ=255)

                                                          aTTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCta                                                                                  <  2:498887/141‑2 (MQ=255)

                                                            ttGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCATGCGCtaaa                                                                                <  1:311317/141‑4 (MQ=255)

                                                             tGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTaa                                                                               >  1:874809/1‑140 (MQ=255)

                                                               gAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAgcg                                                                             >  1:257072/1‑141 (MQ=255)

                                                                aaTCATTTTTCTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAgcgc                                                                            <  2:889321/141‑1 (MQ=255)

                                                                aaTCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAgcgc                                                                            >  1:729823/1‑141 (MQ=255)

                                                                 aTCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATCTTGCATAGCTCCACTTGCCGTTCGCATGCCCTTA‑GTGCTTGCATAAGCGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAGCgca                                                                           <  1:335787/141‑1 (MQ=25)

                                                                  tCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAGCgcat                                                                          >  1:863613/1‑141 (MQ=255)

                                                                    aTTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAGCgcatgc                                                                        <  1:152796/141‑1 (MQ=255)

                                                                     ttttACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAGCgcatgca                                                                       <  2:606959/141‑1 (MQ=255)

                                                                     ttttACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAGCgcatgca                                                                       <  2:418732/141‑1 (MQ=255)

                                                                      tttACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAGCgcatgcat                                                                      <  1:933465/141‑1 (MQ=255)

                                                                        tACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAGCgcatgtctaa                                                                    >  2:901991/1‑136 (MQ=255)

                                                                         aCTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTTCGGTTCGCCTGCGCTTTAGCGCATGCATaaa                                                                   >  2:657345/1‑141 (MQ=255)

                                                                         aCTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATaaa                                                                   >  2:101375/1‑141 (MQ=255)

                                                                             ctgctTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGcc                                                               >  2:378096/1‑141 (MQ=255)

                                                                              tgctTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCCTAAAAGGACCCACCCAACCGAGGTTCACT‑CGCCTCGGTTCGCCTGCCCTTTAGCGCATGCATAAAAGccc                                                              >  1:815442/1‑141 (MQ=21)

                                                                                 tttttATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTa                                                           <  2:504805/141‑1 (MQ=255)

                                                                                 tttttATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTa                                                           <  1:766486/141‑1 (MQ=255)

                                                                                 tttttATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTa                                                           <  1:635123/141‑1 (MQ=255)

                                                                                  ttttATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTaa                                                          <  1:865965/141‑1 (MQ=255)

                                                                                    ttATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTaaca                                                        <  1:344611/141‑1 (MQ=255)

                                                                                      atatTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTaacaac                                                      >  1:595856/1‑141 (MQ=255)

                                                                                        ctttGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATATAAGCCCCTCACATCCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCt                                                    <  2:585429/140‑1 (MQ=255)

                                                                                           tGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAg                                                 >  1:836292/1‑141 (MQ=255)

                                                                                           tGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAg                                                 >  1:836295/1‑141 (MQ=255)

                                                                                             aaaTACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGt                                               >  1:413036/1‑141 (MQ=255)

                                                                                                  cTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCCGAAAAGCCCCTAACAACCTGAGGTCACTa                                          >  1:587174/1‑141 (MQ=255)

                                                                                                  cTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTa                                          >  2:552791/1‑141 (MQ=255)

                                                                                                   tttCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTAc                                         <  2:234429/141‑1 (MQ=255)

                                                                                                    ttCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TTACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTAAGGTCGCTACg                                        >  2:935324/1‑141 (MQ=255)

                                                                                                    ttCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACg                                        <  1:678227/141‑1 (MQ=255)

                                                                                                      cATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCt                                      <  1:618061/141‑1 (MQ=255)

                                                                                                         atTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCg                                   <  1:24083/141‑1 (MQ=255)

                                                                                                           tGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTCCGCTTCGGt                                 >  1:562049/1‑141 (MQ=255)

                                                                                                            gAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGtt                                >  2:314777/1‑141 (MQ=255)

                                                                                                            gAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGtt                                >  1:915024/1‑141 (MQ=255)

                                                                                                                atttCCACTTTCCGTTCGTTTGCGCGTT‑GCGTATGCATTGTAGCCTCTAATAATGTGAGG‑TCACTTCACTGGCGTTCGCCTGCGGTTTTGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGcc                            <  2:220693/138‑1 (MQ=9)

                                                                                                                 gCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGTCCCTAACAACCTGAGGTTACTACGCTTCTGTTCGctt                           >  2:45208/1‑139 (MQ=255)

                                                                                                                  cTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTg                          <  1:425331/141‑1 (MQ=255)

                                                                                                                  cTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCCGTTCGCCTg                          >  2:914423/1‑141 (MQ=255)

                                                                                                                   tCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGACACTACGCTTCGGTTCGCCTgc                         >  1:179352/1‑141 (MQ=255)

                                                                                                                     cACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTgcgc                       <  1:747711/141‑1 (MQ=255)

                                                                                                                      aCTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCt                      <  1:732108/141‑1 (MQ=255)

                                                                                                                       cTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCtt                     >  1:135140/1‑141 (MQ=255)

                                                                                                                        ttGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCtaa                    <  2:104438/141‑3 (MQ=255)

                                                                                                                           ccGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCTTTAgc                 >  2:410317/1‑141 (MQ=255)

                                                                                                                            cGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTGCACATCGGTACGCCTGCGCTGTAgcg                >  2:258300/1‑141 (MQ=14)

                                                                                                                             gTTCGCCNGCGGTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTTCCGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCTTTAgcg                <  2:728044/141‑1 (MQ=11)

                                                                                                                              tccccttcgctttt‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTCCGCTTCCGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCTTTAGCgca              <  2:764034/130‑1 (MQ=11)

                                                                                                                               tCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTCAGGTCACTACGCTTCGGTTCGCCTGCGCTTTAACgcaa             >  2:67691/1‑140 (MQ=255)

                                                                                                                               tCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTACGCTCCGGTTCGCCTGCGCTTTAGCGCATGCACACAAGCCCCTAACAACCTGGGGCCACTACACTGTGGTTCGCCTgggatctggcgtgc             >  1:188096/1‑128 (MQ=14)

                                                                                                                                 gcttgcctttt‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTTCCGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCTTTAGCgcatgc           <  2:265933/133‑1 (MQ=255)

                                                                                                                                  ccTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCTTTAGCgcatgca          <  1:960303/141‑1 (MQ=255)

                                                                                                                                   tgtggtttt‑GCGCATGCATATAAGGCCCTATCTACCTGGGG‑TCACTGCGCTTCCGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCTTTAGCgcatgcat         <  2:546112/135‑1 (MQ=11)

                                                                                                                                    tgagcTTT‑GCGCATGCATAAAAGCCCCTAACCACCTGGGG‑TCACTGCGCTCGGGGTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCTTTAGCGCATGCATa        <  2:257072/138‑1 (MQ=14)

                                                                                                                                    ggacattt‑GTGTATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTACGCTCCCGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCTTTAGCGCATGCATa        <  2:292321/136‑1 (MQ=11)

                                                                                                                                          tt‑GCGCATGCATAAAAGCCCCCATCCACATTAGG‑TCACTCCACTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGTc  <  2:576262/141‑1 (MQ=14)

CAAATTTTAGTTGCCATCAAGGTATATACGAGTAAAAGCAGCGGTAAGTTGATTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGG‑TCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGTC  >  CP000730/2504712‑2504990

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.