Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	1,056,257	0	C	A	20.4%	256.3 / 20.0	98	intergenic (‑1758/+1909)	sspA/atl	S01 family glutamyl endopeptidase/bifunctional N‑acetylmuramoyl‑L‑alanine amidase/mannosyl‑glycoprotein endo‑beta‑N‑acetylglucosaminidase
Reads supporting (aligned to +/- strand):  ref base C (44/34);  new base A (0/20);  total (44/54)
Fisher's exact test for biased strand distribution p-value = 1.17e-06
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

TTGAAAATTGGCGAATACTTGGTGCTCTTAAATATTTAGAATTAGAATTTAAAGAAAGTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAACTACTTTTCAAAATGAATAAAGTGGTTACAGTTAATGTACTTAGACAGTATAAAATTATGAATCTTTAAACTGT  >  CP000730/1056118‑1056395                                                                                                                                            |                                                                                                                                           ttGAAAATTGGCGAATACTTGGTGCTCTTAAATATTTAGAATTAGAATTTAAAGAAAGTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCa                                                                                                                                           <  2:84579/141‑1 (MQ=255) ttGAAAATTGGCGAATACTTGGTGCTCTTAAATATTTAGAATTAGAATTTAAAGAAAGTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCa                                                                                                                                           >  2:950229/1‑141 (MQ=255)   gAAAATTGGCGAATACTTGGTGCTCTTAAATATTTAGAATTAGAATTTAAAGAAAGTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCaaa                                                                                                                                         >  2:751258/1‑141 (MQ=255)   gAAAATTGGCGAATACTTGGGGCTCTTAAATATTTAGAATTAGAATTTAAAGAAAGTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTAAAAGCaaa                                                                                                                                         >  1:247241/1‑141 (MQ=255)    gaaaTTGGCGAATACTTGGTGCTCTTAAATATTTAGAATTAAAATATAAAGAAAGTTTCATTTGTGACTCCTCAAATATAAATCAAATATTTTCTAAAAATTTTGAAATTAATAATATCATAACATACTTTTGACGCaaaa                                                                                                                                        >  2:279886/2‑141 (MQ=255)     aaaTTGGCGAATACTTGGTGCTCTTAAATATTTAGAATTAGAATTTAAAGAAAGTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCaaaaa                                                                                                                                       >  2:42176/1‑141 (MQ=255)      aaTTGGCGAATACTTGGTGCTCTTAAATATTTAGAATTAGAATTTAAAGAAAGTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCaaaaaa                                                                                                                                      >  2:548237/1‑141 (MQ=255)       aTTGGCGAATACTTGGTGCTCTTAAATATTTAGAATTAGAATTTAAAGAAAGTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAg                                                                                                                                     >  2:336393/1‑141 (MQ=255)        ttGGCGAATACTTGGTGCTCTTAAATATTTAGAATTAGAATTTAAAGAAAGTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAgg                                                                                                                                    <  1:106125/141‑1 (MQ=255)         tGGCGAATACTTGGTGCTCTTAAATATTTAGAATTAGAATTTAAAGAAAGTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAggg                                                                                                                                   >  1:4222/1‑141 (MQ=255)         tGGCGAATACTTGGTGCTCTTAAATATTTAGAATTAGAATTTAAAGAAAGTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTAAAAGAAAAAAAggg                                                                                                                                   <  2:170641/141‑1 (MQ=255)          ggCGAATACTTGGTGCTCTTAAATATTTAGAATTAGAATTTAAAGAAAGTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGt                                                                                                                                  >  2:401683/1‑141 (MQ=255)             gAATACTTGGTGCTCTTAAATATTTAGAATTAGAATTTAAAGAAAGTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTaaa                                                                                                                               <  1:25084/141‑1 (MQ=255)             gAATACTTGGTGCTCTTAAATATTTAGAATTAGAATTTAAAGAAAGTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTaaa                                                                                                                               <  1:455390/141‑1 (MQ=255)             gAATAATTGGTGCTCTTAAATATTAAGAATTAGAATTTAAAGAAAGTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATAAAAAAAAAAAAAAAAAGGGTaaa                                                                                                                               <  2:68700/141‑1 (MQ=255)                 aCTTGATGCTCTTAAATATTAAGAATTAGAATGTAAAGAAAGTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATAATAAAAAAAAAAAAAAGGGTAAATTAc                                                                                                                           <  2:72052/141‑1 (MQ=255)                  cTTGGTGCTCTTAAAAAAATAGAATTAGAATTTAAAGAAAGTTTCATTTGTGACAACTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATAAAAAAAAAAAAAAAAAGGGTAAATTACt                                                                                                                          <  2:889499/141‑1 (MQ=255)                     ggTGCTCTTAAATATTTAGAATTAGAATTTAAAGAATGTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACATTTAAAGCAAAAAAGGGTAAATTACTTaa                                                                                                                       <  1:615262/141‑1 (MQ=255)                     ggTGCTCTTAAATATTTAGAATTAGAATTTAAAGAAAGTTTCATTTGTGACAACTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGAAAAAAAGGGTAAATTACTTaa                                                                                                                       <  2:628369/141‑1 (MQ=255)                     agtgaaaaaaaataaatAGAATTAGAATTTAAAGAAAGTTTCATTTGTGACAACTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATAAAAAAAAAAAAAAAAAGGGTAAATTACTTaa                                                                                                                       <  2:628425/132‑1 (MQ=255)                      gTGCTCTTAAATATTTAGAATCAGAATTTAAAGAAAGTTTCATTTGTGACACCTCAAATCTAAATCAAATATTGTCTAAAAATTTAGAAATTAACAATATCATAACATCCTTTTAAAGCAACAAAGGGTAAATTACTTAAg                                                                                                                      >  2:534331/1‑141 (MQ=255)                         ctctTAAATATTTAGAATTAGAATTTAAAGAAAGTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCtt                                                                                                                   <  1:681247/141‑1 (MQ=255)                           ctTAAATATTTAGAATTAGAATTTAAAGAAAGTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTa                                                                                                                 <  1:220741/141‑1 (MQ=255)                           ctTAAATATTTAGAACTAGAATTTAAAGAAAGTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTa                                                                                                                 <  1:804418/141‑1 (MQ=255)                           aaaaaaTATTTAGAATTAGAATTTAAAGAAAGTTTCATTTGTGACAACTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATAAAAAAAAAAAAAAAAAGGGTAAATTACTTAAGCTTTa                                                                                                                 <  2:584536/138‑1 (MQ=255)                            ttAAATATTTAGAATTAGAATTTAAAGAAAGTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTAt                                                                                                                >  2:796998/1‑141 (MQ=255)                            ttAAATATTTAGAATTAGAATTTAAAGAAAGTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTAt                                                                                                                >  1:584536/1‑141 (MQ=255)                              aaaTATTTAGAATTAGAATTTAAAGAAAGTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTAttt                                                                                                              >  1:386403/1‑141 (MQ=255)                               aaTATTTAGAATTAGAATTTAAAGAAAGTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTg                                                                                                             >  2:313384/1‑141 (MQ=255)                                     tagaattagaatTTAAAGAAAGTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAAc                                                                                                       >  1:775673/1‑141 (MQ=255)                                     tagaattagaatTTAAAGAAAGTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAAc                                                                                                       <  1:555970/141‑1 (MQ=255)                                     tagaattagaatTTAAAGAAAGTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAAc                                                                                                       <  1:201203/141‑1 (MQ=255)                                     tagaattagaatTTAAAGAAAGTTTAATTTGTGACACCTAAAATATAAAAAAAAAAAAGTATAAAAATTTAGAAATAAATAATATCATAACATAATTTTAAAGAAAAAAAGGGTAAATTACTTTTGCTTTAtaaaaaaaaa                                                                                                       <  2:555452/141‑10 (MQ=255)                                      agaattagaattTAAAGAAAGTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACg                                                                                                      <  1:43390/141‑1 (MQ=255)                                       gaattagaattTAAAGAAAGTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGa                                                                                                     >  1:429333/1‑141 (MQ=255)                                           tagaattTAAAGAAAGTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGaaaaa                                                                                                 <  1:406766/141‑1 (MQ=255)                                            agaattTAAAGAAAGTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAAt                                                                                                >  2:649143/1‑141 (MQ=255)                                             gaattTAAAGAAAGTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATg                                                                                               <  1:509955/141‑1 (MQ=255)                                             gaattTAAAGAAAGTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATg                                                                                               <  1:532228/141‑1 (MQ=255)                                               attTAAAGAAAGTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAGTTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAAAGAAAAATGTc                                                                                             >  2:200963/1‑141 (MQ=255)                                                  tAAAGAAAGTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTaa                                                                                          >  1:164531/1‑141 (MQ=255)                                                    aagaaagTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAAt                                                                                        >  1:7412/1‑141 (MQ=255)                                                     agaaagTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATa                                                                                       <  1:544437/141‑1 (MQ=255)                                                     agaaagTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATa                                                                                       <  1:657400/141‑1 (MQ=255)                                                       aaagTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATaca                                                                                     >  2:701530/1‑141 (MQ=255)                                                         agTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACt                                                                                   >  1:227471/1‑141 (MQ=255)                                                         agTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACt                                                                                   >  1:870302/1‑141 (MQ=255)                                                         agTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACt                                                                                   >  1:920670/1‑141 (MQ=255)                                                           tttCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTgt                                                                                 <  2:951440/141‑1 (MQ=255)                                                            ttCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTgta                                                                                >  2:454579/1‑141 (MQ=255)                                                              taTTTGTGACAACGAAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACAAAAAAAAAAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTgtagt                                                                              <  2:495503/140‑1 (MQ=255)                                                              cATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTgtagt                                                                              >  2:375629/1‑141 (MQ=255)                                                               aTTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATTATTACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTgtagta                                                                             <  1:17629/141‑1 (MQ=255)                                                                tttGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTaa                                                                            <  1:234773/141‑1 (MQ=255)                                                                  tgtgACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTATTAAAAAAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAact                                                                          <  2:799828/141‑1 (MQ=255)                                                                    tgACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAactac                                                                        >  1:909681/1‑141 (MQ=255)                                                                     gACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAactact                                                                       <  1:403913/141‑1 (MQ=255)                                                                      acacCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAACTACtt                                                                      <  1:336393/141‑1 (MQ=255)                                                                           tCAAATATAAATAAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAACTACTTTTCaa                                                                 <  1:151483/141‑1 (MQ=255)                                                                              aaTATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAACTACTTTTCAAAAt                                                              >  1:607190/1‑141 (MQ=255)                                                                                tataAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAACTACTTTTCAAAATGa                                                            >  2:102258/1‑141 (MQ=255)                                                                                aataAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAACTACTTTTCAAAATGa                                                            <  1:263984/140‑1 (MQ=255)                                                                                 ataAATCAAATATTATCTAAAAATTTAGAAATTAATAATATCATAACATAAAAAAAAAAAAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAACTACTTTTCAAAATGaa                                                           <  2:53831/141‑1 (MQ=255)                                                                                  taAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAACTACTTTTCAAAATGAAt                                                          >  1:278060/1‑141 (MQ=255)                                                                                   aaaTCAAATATTGTCTAAAAATTTAGAAATTGATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAACTACTTTTCAAAATGAATa                                                         <  1:534331/141‑1 (MQ=255)                                                                                         aaTATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAACTACTTTTCAAAATGAATAAAGTgg                                                   <  1:473093/141‑1 (MQ=255)                                                                                          atatTGTCTAAAAATTTAGAAATTAATAATATCATCACATACTTGTAAAGCAAAAAAGTGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAACTACTTTTCAAAATGAATAAAGTGGt                                                  <  1:625735/141‑1 (MQ=255)                                                                                          atatTGTCTAAAAATTTAGAAATTAATAATATCATAACATAAAAAAAAAAAAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAACTACTTTTCAAAATGAATAAAGTGGt                                                  <  2:293523/141‑1 (MQ=255)                                                                                           tatTGTCTAAAAATTTAGAAATTAATAATATCATAACATACATATAAAAAAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAACTACTTTTCAAAATGAATAAAGTGGtt                                                 <  2:411132/141‑1 (MQ=255)                                                                                            atTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAACTACTTTTCAAAATGAATAAAGTGGTTa                                                >  2:138879/1‑141 (MQ=255)                                                                                               gTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAACTACTTTTCAAAATGAATAAAGTGGTTACAg                                             >  1:108065/1‑141 (MQ=255)                                                                                               gTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAACTACTTTTCAAAATGAATAAAGTGGTTACAg                                             >  1:222495/1‑141 (MQ=255)                                                                                                 cTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAACTACTTTTCAAAATGAATAAAGTGGTTACAGtt                                           <  1:92545/141‑1 (MQ=255)                                                                                                 cTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAACTACTTTTCAAAATGAATAAAGTGGTTACAGtt                                           >  1:723570/1‑141 (MQ=255)                                                                                                    aaaaTATAGAAATTAATAATATCATAACATAATAAAAAAAAAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAACTACTTTTCAAAATGAATAAAGTGGTTACAGTTAAt                                        <  2:388805/141‑1 (MQ=255)                                                                                                     aaaTTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAACTACTTTTCAAAATGAATAAAGTGGTTACAGTTAATg                                       >  1:789114/1‑141 (MQ=255)                                                                                                      aaTTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAACTACTTTTCAAAATGAATAAAGTGGTTACAGTTAATGt                                      <  2:4222/141‑1 (MQ=255)                                                                                                           aGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAACTACTTTTCAAAATGAATAAAGTGGTTACAGTTAATGTACTTa                                 >  1:681622/1‑141 (MQ=255)                                                                                                                ttAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAACTACTTTTCAAAATGAATAAAGTGGTTACAGTTAATGTACTTAGACAg                            <  1:375629/141‑1 (MQ=255)                                                                                                                tatataataTCATAACATAAAAAAAAAAAAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAACTACTTTTCAAAATGAATAAAGTGGTTACAGTTAATGTACTTAGACAg                            <  2:228144/138‑1 (MQ=255)                                                                                                                 taataaTATCATAACATAAAAAAAAAAAAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAACTACTTTTCAAAATGAATAAAGTGGTTACAGTTAATGTACTTAGACAGt                           <  2:226136/141‑1 (MQ=255)                                                                                                                 taataaTATCATAACATAAAAAAAAAAAAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAACTACTTTTCAAAATGAATAAAGTGGTTACAGTTAATGTACTTAGACAGt                           <  2:226223/141‑1 (MQ=255)                                                                                                                 taataaTATCAGAACATTCTAATTAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTACTAACTACTTTTCAAAATCAATAAAGTGGTTACAGTTAATGTACTTAGACAGt                           <  2:964965/141‑1 (MQ=255)                                                                                                                 taataaTATCAAAACATAAATAAAAAGAAAAAAAGGGTAAATTACTTAAGCTTTATATGAAAAACGAAAAATGTCTAAATACACTGTAGTAACTACTTTTCAAAATGAATAAAGTGGTTACAGTTAATGTACTTAGACAGt                           <  2:226289/141‑1 (MQ=255)                                                                                                                     aataTAATAACATAAAAATAAAAAAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAACTACTTTTCAAAATGAATAAAGTGGTTACAGTTAATGTACTTAGACAGTATaa                       <  2:965894/141‑1 (MQ=255)                                                                                                                       tatCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAACTACTTTTCAAAATGAATAAAGTGGTTACAGTTAATGTACTTAGACAGTATaaaa                     >  2:286747/1‑141 (MQ=255)                                                                                                                        atCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAACTACTTTTCAAAATGAATAAAGTGGTTACAGTTAATGTAATTAGACAGTATAAAAt                    >  2:549520/1‑141 (MQ=255)                                                                                                                            taacataataaaaaaGAAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAACTACTTTTCAAAATGAATAAAGTGGTTACAGTTAATGTACTTAGACAGTATAAAATTATg                <  2:618713/129‑1 (MQ=255)                                                                                                                             aaCATACTTTTAAAGCAAAAAAGGGTAAATTAATTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAACTACTTTTCAAAATGAATAAAGTGGTTACAGTTAATGTACTTAGACAGTATAAAATTATGa               <  1:937516/141‑1 (MQ=255)                                                                                                                               cATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAACTACTTTTCAAAATGAATAAAGTGGTTACAGTTAATGTACTTAGACAGTATAAAATTATGAAt             <  2:261947/141‑1 (MQ=255)                                                                                                                                 tACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAACTACTTTTCAAAATGAATAAAGTGGTTACAGTTAATGTACTTAGACAGTATAAAATTATGAATCt           >  1:101320/1‑141 (MQ=255)                                                                                                                                 tACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAACTACTTTTCAAAATGAATAAAGTGGTTACAGTTAATGTACTTAGACAGTATAAAATTATGAATCt           <  1:386111/141‑1 (MQ=255)                                                                                                                                   cTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAACTACTTTTCAAAATGAATAAAGTGGTTACAGTTAATGTACTTAGACAGTATAAAATTATGAATCttt         >  2:246786/1‑141 (MQ=255)                                                                                                                                   cTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAACTACTTTTCAAAATGAATAAAGTGGTTACAGTTAATGTACTTAGACAGTATAAAATTATGAATCttt         >  1:239869/1‑141 (MQ=255)                                                                                                                                   cTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAACTACTTTTCAAAATGAATAAAGTGGTTACAGTTAATGTACTTAGACAGTATAAAATTATGAATCttt         >  1:825316/1‑141 (MQ=255)                                                                                                                                      taaaaaCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAACTACTTTTCAAAATGAATAAAGTGGTTACAGTTAATGTACTTAGACAGTATAAAATTATGAATCTTTaaa      <  2:86312/139‑1 (MQ=255)                                                                                                                                         aaGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAACTACTTTTCAAAATGAATAAAGTGGTTACAGTTAATGTACTTAGACAGTATAAAATTATGAATCTTTAAACtg   >  1:668400/1‑141 (MQ=255)                                                                                                                                          aGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAACTACTTTTCAAAATGAATAAAGTGGTTACAGTTAATGTACTTAGACAGTATAAAATTATGAATCTTTAAACtgt  >  1:957324/1‑141 (MQ=255)                                                                                                                                            |                                                                                                                                           TTGAAAATTGGCGAATACTTGGTGCTCTTAAATATTTAGAATTAGAATTTAAAGAAAGTTTCATTTGTGACACCTCAAATATAAATCAAATATTGTCTAAAAATTTAGAAATTAATAATATCATAACATACTTTTAAAGCAAAAAAGGGTAAATTACTTAAGCTTTATTTGAAAAACGAAAAATGTCTAAATACACTGTAGTAACTACTTTTCAAAATGAATAAAGTGGTTACAGTTAATGTACTTAGACAGTATAAAATTATGAATCTTTAAACTGT  >  CP000730/1056118‑1056395

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑