| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 811555 = | 42 (1.100) | 4 (0.110) | 3/262 | 6.2 | 10.3% | intergenic (+160/‑117) | USA300HOU_0757/USA300HOU_0758 | hypothetical protein/hypothetical protein |
| ? | CP000730 | = 1903651 | 30 (0.830) | intergenic (+105/+190) | arsC2/gad | arsenate reductase (glutaredoxin)/possible mannosyl‑glycoprotein endo‑beta‑N‑glucosaminidase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATTTTGTTTACTTAAAGTAAAATAGAACACTTAAGATTTTGATGTCTGGGAATAGTGGAAATGATAAAAACTACTAATGATTGATTAAGTAGTGGTTCTTAACATTAGCCTCAGCTAATGTGTACTTAAAAATAGGAATACATGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/811701‑811555‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catgagtTTTACTCATGTATTCCTATTTTTAAGTACACATTAGTTATAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGTTTTTTTATCATTTCTGTCCCACTCTCATCGTGATTTGAAATTTTCAATTGCGAT < CP000730/1903651‑1903517 ATTTTGTTTACTTAAAGTAAAATAGAACACTTAAGATTTTGATGTCTGGGAATAGTGGAAATGATAAAAACTACTAATGATTGATTAAGTAGTGGTTCTTAACATTAGCCTCAGCTAATGTGTACTTAAAAATAGGAATAC > 2:408840/1‑141 TTTTGTTTACTTAAAGTAAAATAGAACACTTAAGATTTTGATGTCTGGGAATAGTGGAAATGATAAAAACTACTAATGATTGATTAAGTAGTGGTTCTTAACATTAGCCTCAGCTAATGTGTACTTAAAAATAGGAATACA < 1:356247/141‑1 CTTAAAGTAAAATAGAACACTTAAGATTTTGATGTCTGGGAATAGTGGAAATGATAAAAACTACTAATGATTGATTAAGTAGTGGTTCTTAACATTAGCCTCAGCTAATGTGTACTTAAAAATAGGAATACATGAGTTTTA < 2:157789/141‑1 CTTAAAGTAAAATAGAACAATTAAGATTTTGATGTCTGGGAATAGTGGAAATGATAAAAACTACTAATGATTGATTAAGTAGTGGTTCTTAACATTAGCCTCAGCTAATGTGTACTTAAAAATAGGAATACATGAGTTTTA < 2:19664/141‑1 TTGATTAAGTAGTGGTTCTTAACATTAGCCTCAGCTAATGTGTACTTAAAAATAGGAATACATGAGTTTTACTCATGTATTCCTATTT < 2:230474/88‑1 TTGATTAAGTAGTGGTTCTTAACATTAGCCTCAGCTAATGTGTACTTAAAAATAGGAATACATGAGTTTTACTCATGTATTCCTATTT > 1:230474/1‑88 ATGAGTTTTACTCATGTATTCCTATTTTTAAGTACACATTAGTTATAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGTTTTTTTATCATTTCTGTCCCACTCTCATCGTGATTTGAAATTTTCAATTGCGAT < 2:108559/141‑1 ATTTTGTTTACTTAAAGTAAAATAGAACACTTAAGATTTTGATGTCTGGGAATAGTGGAAATGATAAAAACTACTAATGATTGATTAAGTAGTGGTTCTTAACATTAGCCTCAGCTAATGTGTACTTAAAAATAGGAATACATGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/811701‑811555‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catgagtTTTACTCATGTATTCCTATTTTTAAGTACACATTAGTTATAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGTTTTTTTATCATTTCTGTCCCACTCTCATCGTGATTTGAAATTTTCAATTGCGAT < CP000730/1903651‑1903517 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |