New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP000730 | 811555 = | 42 (1.100) | 4 (0.110) | 3/262 | 6.2 | 8.8% | intergenic (+160/‑117) | USA300HOU_0757/USA300HOU_0758 | hypothetical protein/hypothetical protein |
? | CP000730 | = 2664960 | 43 (1.190) | intergenic (+195/‑283) | pat/USA300HOU_2519 | acetyltransferase/hypothetical protein | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
ACAAGCCAACATATAAAATTTTAAACTTCTCAGGGGAGTGGGACAGAAATGATAAAGAGCCACTAATGATTTATTATGTAGTGGTTCTTACACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTT > CP000730/2664821‑2665099 | acaAGCCAACATATAAAATTTTAAACTTCTCAGGGGAGTGGGACAGAAATGATAAAGAGCCACTAATGAGTTATTATGTAGTGGTTCTTACACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTaaaa > 2:34442/1‑141 (MQ=255) cATATAAAATTTTAAACTTCTCAGGGGAGTGGGACAGAAATGATAAAGAGCCACTAATGATTTATTATGTAGTGGTTCTTACACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCAt < 1:327740/141‑1 (MQ=255) taAAATTTTAAACTTCTCAGGGGAGTGGGACAGAAATGATAAAGAGCCACTAATGATTTATTATGTAGTGGTTCTTACACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGa < 1:152204/141‑1 (MQ=255) aaTTTTAAACTTCTCAGGGGAGTGGGACAGAAATGATAAAGAGCCACTAATGATTTATTATGTAGTGGTTCTTACACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAAt < 1:221609/141‑1 (MQ=255) tttAAACTTCTCAGGGGAGTGGGACAGAAATGATAAAGAGCCACTAATGATTTATTATGTAGTGGTTCTTACACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACt > 1:124982/1‑141 (MQ=255) ttAAACTTCTCAGGGGAGTGGGACAGAAATGATAAAGAGCCACTAATGATTTATTATGTAGTGGTTCTTACACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTa < 1:127185/141‑1 (MQ=255) ttttttggAGTGGGACAGAAATGATAAAGAGCCACTAATGATTTATTATTTAGTGGTTCTTACACATTAGCCACATCTAATTTTTACTTAAAAATAGAAATACATGAGTAAAACTCATGCATAAGAATTACTAATTTCtat > 2:21396/7‑141 (MQ=11) cAGGGGAGTGGGACAGAAATGATAAAGAGCCACTAATGATTTATTATGTAGTGGTTCTTACACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAg > 1:153620/1‑141 (MQ=35) ggtgtgtGACAGAAATGGTAAAGGGCTTCTAATGATTTAATATATAGTGATACTAACGCATTATCAAAAGCTAATAAAAAAAAAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGaaaa < 2:62915/138‑1 (MQ=2) gAGTGGGACAGAAATGATAAAGAGCCACTAATGATTTATTATGTAGTGGTTCTTACACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGaaaaa > 1:330589/1‑141 (MQ=32) aGTGGGACAGAAATGATAAAGAGCCACTAATGATTTATTATGTAGTGGTTCTTACACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAg < 1:141135/141‑1 (MQ=32) gTGAGACAGAAATGATAAAGAGCCACTAATGATTTAATATGTAGTAGTTCTTACACATTAGCCACAAAAAAAAAAAAAAAAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGt < 2:168281/141‑1 (MQ=11) aCAGAAATGATAAAGAGCCACTAATGATTTATTATGTAGTGGTTCTTACACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTc < 2:28491/141‑1 (MQ=34) gAAATGATAAAGAGCCACTAATGATTTATTATGTAGTGGTTCTTACACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCttt > 1:407732/1‑141 (MQ=35) tGATAAAGAGCCACTAATGATTTATTATGTAGTGGTTCTTACACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTAtcg > 1:9866/1‑141 (MQ=35) tGATAAAGAGCCACTAATGATTTATTATGTAGTGGTTCTTACACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGCAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTAtcg > 2:90198/1‑141 (MQ=21) gATAAAGAGCCACTAATGATTTATTATGTAGTGGTTCTTACACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTAtcgt > 2:290849/1‑141 (MQ=35) aaGAGCCACTAATGATTTATTATGGAGTGGTTCTTACACATGAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCgtcgtc > 2:295300/1‑141 (MQ=255) agagCCACTAATGATTTATTATGTAGTGGTTCTTACACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTcc < 1:253663/141‑1 (MQ=39) aTGATTTATTATGTAGTGGTTCTTACACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACt < 1:154861/141‑1 (MQ=35) aTGATTTATTATGTAGTGGTTCTTACACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTAATGCATAAGAAAAACCAGTTTCTATAGAAAAAGTATTTCTGTATCGTCGTCCCACCCCAAca < 2:206661/141‑2 (MQ=11) gTAGTGGTTCTTACACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTg < 2:223695/141‑1 (MQ=40) gTGGTTCTTACACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTAGTACCACCCCAACTCGAACATTATTGTaa > 1:400731/1‑141 (MQ=255) ggTTCTTACACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGcaggaaaaacggtat > 1:375052/1‑128 (MQ=255) tACACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACtt > 2:104518/1‑141 (MQ=40) cacaTTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGAcgaaa < 2:56075/141‑5 (MQ=38) aacaTTAGCAAAAGATAACGTGTACTAAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAAAAACAAAAAAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACtttc < 2:21668/140‑2 (MQ=11) caTTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCg > 2:13511/1‑141 (MQ=255) aTTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGt < 1:104518/141‑1 (MQ=255) ctgtggCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCt > 1:106893/6‑141 (MQ=255) caGCTAATGTGAACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATAACTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTCt < 2:10044/141‑1 (MQ=255) gcgaaggtgtATTTAAAAATAGGGATACGTGAGTAAAACTCATGCATAAGAAAGACTAAGTTCTATAGAAAAAGTATTGCTTTGTCGTCTTCCCACCGCAACTCGCACAGTATTGTAAGCTGGCTTTTCGTCAGGTTCtgt < 2:140604/135‑1 (MQ=14) gCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTCtgt > 1:239098/1‑141 (MQ=255) gtACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGc > 2:189973/1‑141 (MQ=255) aCTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGccc > 1:195742/1‑141 (MQ=255) aaaaTAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCaaaaa > 2:176177/1‑141 (MQ=255) aaTAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGc > 1:242914/1‑141 (MQ=255) aaTAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTATATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGc < 2:49903/141‑1 (MQ=255) aTAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCt < 1:369190/141‑1 (MQ=255) ggAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGt > 2:346259/1‑141 (MQ=255) ggAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGt > 2:242698/1‑141 (MQ=255) aTGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAgc < 1:132411/141‑1 (MQ=255) gAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTGTATCGTCGTCGCACCCCAACTCGCTCATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCTCCAAAAGCTTGTTAGAAgcac < 2:211130/141‑3 (MQ=17) aaaCTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCAtttt > 1:377461/1‑141 (MQ=255) | ACAAGCCAACATATAAAATTTTAAACTTCTCAGGGGAGTGGGACAGAAATGATAAAGAGCCACTAATGATTTATTATGTAGTGGTTCTTACACATTAGCCACAGCTAATGTGTACTTAAAAATAGGAATACATGAGTAAAACTCATGCATAAGAAATACTAATTTCTATAGAAAAAGTATTTCTTTATCGTCGTCCCACCCCAACTCGCACATTATTGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCAAAAAGCTTGTTACAAGCGCATTTT > CP000730/2664821‑2665099 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |