Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	2,504,894	0	C	T	23.5%	132.5 / 38.6	85	intergenic (+198/+206)	USA300HOU_2365/gltT	hypothetical protein/DAACS family dicarboxylate/amino acid:sodium (Na+) or proton (H+) symporter
Reads supporting (aligned to +/- strand):  ref base C (30/35);  new base T (14/6);  total (44/41)
Fisher's exact test for biased strand distribution p-value = 7.65e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.83e-01
Rejected as consensus: Frequency below/above cutoff threshold.

TGATTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGTCCCTAACAACCTGAGGTCACTACGCTTCCGTTCGCCTGCGCTTT  >  CP000730/2504761‑2505033                                                                                                                                       |                                                                                                                                            tGATTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTGCGCTCCGGTTCg                                                                                                                                      <  1:134882/141‑1 (MQ=255)  gATTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCTGTTCGCCTGCGCTTTGGCGCTGGCTTAAACCCCCCTAACAA‑CTGAGGTTACTGCGATCAgggttgg                                                                                                                                     >  2:349598/1‑136 (MQ=255)   aTTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTGCGCTCCGGTTCGcc                                                                                                                                    >  1:175007/1‑141 (MQ=255)   aTTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTGCGCTCCGGTTCGcc                                                                                                                                    <  2:35737/141‑1 (MQ=255)   aTTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTGCGCTCCGGTTCGcc                                                                                                                                    <  2:229875/141‑1 (MQ=255)     ttCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTGCGCTCCGGTTCGCCTg                                                                                                                                  <  1:76723/141‑1 (MQ=255)     ttCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTGCGCTCCGGTTCGCCTg                                                                                                                                  <  1:576/141‑1 (MQ=255)        cAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTGCGCTCCGGTTCGCCTgcgc                                                                                                                               <  2:355180/141‑1 (MQ=255)               gAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTGCGCTCCGGTTCGCATGCGCtaaagcg                                                                                                                        <  1:298961/141‑7 (MQ=255)                aaTCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTGCGCTCCGGTTCGCCTGCGCTTTAgcgc                                                                                                                       >  1:101961/1‑141 (MQ=255)                 aTCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTGCGCTCCGGTTCGCCTGCGCTTTAGCgca                                                                                                                      >  2:72254/1‑141 (MQ=255)                 aTCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTGCGCTCCGGTTCGCCTGCGCTTTAGCgca                                                                                                                      >  1:315874/1‑141 (MQ=255)                 aTCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTGCGCTCCGGTTCGCCTGCGCTTTAGCgca                                                                                                                      >  1:315892/1‑141 (MQ=255)                     ttttTCTGCTGCTTTTTATTTTTTAACTACTTTCATCTTGAATACTGCCACTTGCCGTTCATCTGCGCTGT‑GCGCTTCCTTAAGCGCCCCTGACCCCCTGATGTCACTGCGCTCCGGTTCGCCTGCGCCTTAGCgcatgca                                                                                                                  <  2:413888/141‑1 (MQ=255)                     ttttACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTGCGCTCCGGTTCGCCTGCGCTTTAGCgcatgca                                                                                                                  <  2:145512/141‑1 (MQ=255)                     cctgcgctttagcgcatgcataaaagtccctaacaacctgaggtcactacgcttccgttcgcctgcgctttaGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTCCTTTTCGCCTGCACATTATctcatga                                                                                                                   <  2:223218‑M1/69‑2 (MQ=255)                      ccgccccttagcgcatgcataaaagcccctaacaacctgaggtcactacgcttccgttcgcctgcgctttaGCGCATGCATAAATGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCTTTAGCgcatgca                                                                                                                  >  2:405447‑M1/72‑141 (MQ=255)                       ttACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCCCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATa                                                                                                                <  1:252615/141‑1 (MQ=255)                         aCTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATaaa                                                                                                              >  1:112410/1‑141 (MQ=255)                         aCTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATaaa                                                                                                              <  1:315602/141‑1 (MQ=255)                              tgctTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGAATAAAAGACCCTCACAAACTGCGGTCGCTCCGATCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGccc                                                                                                         >  1:140811/1‑141 (MQ=25)                              tagcgcatgcataaaagtccctaacaacctgaggtcactgcgcttccgttcgcctgcgctttaGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCTTTAGCGCATGCATAAaagtc                                                                                                          >  1:305554‑M1/64‑139 (MQ=255)                                 tttttATATTTTAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCTCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACATCCTGAGGTCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTa                                                                                                      <  2:64048/141‑1 (MQ=255)                                    atgcataaaagtccctaacaacctgaggtcactacgcttccgttcgcctgcgctttaGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCGCAACGCTTTTTTTCGCCTGCGCATtatcgcatgaatagatgtcccttat                                                                                                    <  2:224772‑M1/84‑13 (MQ=255)                                     tataTTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTaacaa                                                                                                  >  1:352073/1‑141 (MQ=255)                                           tGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTATCAACCTGAGGTCACTGCGCTCCCGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAg                                                                                            <  2:400734/141‑1 (MQ=255)                                              aaTACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTc                                                                                         <  1:152467/141‑1 (MQ=255)                                                tACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCAc                                                                                       <  1:55137/141‑1 (MQ=255)                                                 aCTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑ACGCATGCATTAAAACCCCTTAAAACCTAAGGTCACTACGCTCCGGTTCGCCTCCGCTATAGTGCATGCATAAAAGCCCCTAACAACCTTAGGGCaat                                                                                      >  2:270851/1‑139 (MQ=18)                                                    ttCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACg                                                                                   <  2:187039/141‑1 (MQ=255)                                                    ttCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACg                                                                                   >  2:285104/1‑141 (MQ=255)                                                     acaacctgaggtcactacgcttccgttcgcctgcgctttaGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGTCCCTAACAACCTGAGGTCACTACg                                                                                   >  2:112410‑M1/41‑141 (MQ=255)                                                            gaggtcactacgcttccgttcgcctgcgctttaGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCGCCGGATCGCCTGCGCATTATCGCATGCATAAAAGTCCCTAACACCCTGCGGTCACTACGcttccgt                                                                            <  2:116937‑M1/108‑4 (MQ=255)                                                            gAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGGTCCCTGCGCTCCGGTTCGCCTGCCCCTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGGCACTACGCTTCGGtt                                                                           >  1:201095/1‑141 (MQ=255)                                                            gAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGtt                                                                           >  2:134425/1‑141 (MQ=255)                                                            gAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGtt                                                                           >  1:212449/1‑141 (MQ=255)                                                            gAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGtt                                                                           >  1:164659/1‑141 (MQ=255)                                                            gAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGtt                                                                           >  1:147311/1‑141 (MQ=255)                                                             aggtcactacgcttccgttcgcctgcgctttaGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCATTAGCGCATGCATACAAGTCCCtaacacccggcggtctcttctctcccgtt                                                                           <  2:16997‑M1/109‑15 (MQ=255)                                                              aTAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTGCGCTCCGGTTCCCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCg                                                                         <  2:127403/141‑1 (MQ=255)                                                                aGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGcc                                                                       >  2:316752/1‑141 (MQ=255)                                                                 cactccgcttcggttcgcctgcgctttaGCGCATGCATAAAGGTCCCTAACAACCTGAGGTCACTACGCTTCCGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGcc                                                                       >  1:332618‑M1/29‑141 (MQ=255)                                                                 cactacgcttcggttcgcctgcgctttaGCGCATGCATAAAAGTCCCTAACAACCTGAGGTCACTACGCTTCCGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGcc                                                                       >  1:258032‑M1/29‑141 (MQ=255)                                                                 cactacgcttcggttcgcctgccctttaGCGCATGCATAAAAGTCCCTAACAACCTGAGGTCACTACGCTTCCGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGcc                                                                       >  1:332613‑M1/29‑141 (MQ=255)                                                                  cTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGGTCGCCtc                                                                     >  2:380245/1‑140 (MQ=255)                                                                     cACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTTCGCTCCGGGTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTgcgc                                                                  >  1:143931/1‑141 (MQ=255)                                                                      aattGCCGTTCGCCTTAGCTTT‑GCTCATGCATAAAAGCCCCTAACAACCTGAGGTCACTGCGCTCCGGTTCGCCTTCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCt                                                                 <  2:10040/139‑1 (MQ=255)                                                                             gTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCGGAGGTCACTGCGCTCCGGTTAGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTAAGGTCACTACGTGTCTTATCGCCTTCGCATTAgcgg                                                          >  2:205679/1‑140 (MQ=14)                                                                                   cTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCTTTAGCgcttgcat                                                    >  1:145578/1‑141 (MQ=255)                                                                                    tGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGGTTACTACGCTCCGGTTCGGCTGCGCCTTAGCGCATGCATTAAAGGCCCTAACAACCTAAGGTCACTAAGGTTCGGTTCAGCTGCGCTATAGCgcatgcatt                                                   >  2:223464/1‑140 (MQ=11)                                                                                      gcgcaaaGCGCAGGCATAAAAGCCCCTAACAACCTGAGGTCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCTTTAGCGCATGCATaa                                                  <  1:376218‑M1/134‑1 (MQ=255)                                                                                      cgcTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACg                                                                                   <  2:34578/107‑1 (MQ=255)                                                                                      cgcTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACg                                                                                   >  1:34578/1‑107 (MQ=255)                                                                                       cgtgttgcgttttCATTAAAGACCCTAACCACCTGAGATCACTGCGCTCCGGTTCGCCCGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCTTTAGCGCATGCATaaa                                                 >  2:401567‑M1/14‑141 (MQ=255)                                                                                        gcctggcgcATGAATGAAAACCCCTATGTACCTGCGGTCACGGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCGGACGACCTGCGGTCACTACGCGTCGGTTCGCCTGTGCTTTAGCGCATGCATaaaa                                                <  2:133283/136‑1 (MQ=14)                                                                                           taGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTGCGCTTCCGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGTc                                             >  2:175007‑M1/3‑141 (MQ=255)                                                                                             GCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGCGGTCACTACGCTTCCGTTCGCCTGCGCTTTAGCGCATCCATaaaagcccc                                           <  2:255674‑M1/141‑5 (MQ=255)                                                                                             GCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACg                                                                                   <  1:162000‑M1/101‑1 (MQ=255)                                                                                             GCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACg                                                                                   >  2:162000‑M1/1‑101 (MQ=255)                                                                                             GCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGTccc                                           <  1:78332‑M1/141‑1 (MQ=255)                                                                                             GCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGTccc                                           <  1:405447‑M1/141‑1 (MQ=255)                                                                                              CGCATGCATAAAAGTCCCTAACAACCTGAGGTCACTACGCTTCCGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGTCCCt                                          <  1:4999‑M1/141‑1 (MQ=255)                                                                                               GCATGCATAAAAGTCCCTAACAACCTGAGGTCACTACGCTTCCGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGTCCCTa                                         >  1:137793‑M1/1‑141 (MQ=255)                                                                                                 ATGCATAAAAGTCCCTAACAACCTGAGGTCACTACGCTTCCGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGTCCCTaac                                       >  1:158900‑M1/1‑141 (MQ=255)                                                                                                 ATGCATAAAAGTCCCTAACAACCTGAGGTCACTACGCTTCCGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCTTAAGCGCATGCATAAAAGTCCCTaac                                       >  1:72254‑M1/1‑141 (MQ=255)                                                                                                  TGCATAAAAGTCCCTAACAACCTGAGGTCACTACGCTTCCGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGTCCCTaaca                                      >  1:404771‑M1/1‑141 (MQ=255)                                                                                                  TGCATAAAAGCCCCTAACAACCTGAGGTCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGATCACTACGCTTCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGTCCCTaaca                                      <  1:97170‑M1/141‑1 (MQ=255)                                                                                                   GCATAAAAGCCCCTAACAACCTGAGGTCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGTCCCTaacaa                                     <  2:260823‑M1/141‑1 (MQ=255)                                                                                                     ATAAAAGCCCCTAACAACCTGAGGTCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCCGTTCGCCTGCGCTTTAGCGCATGCATAAAAGTCCCTAACAAcc                                   <  2:189643‑M1/141‑1 (MQ=255)                                                                                                       aagcgtCCCCAACAACCTGAAGTCACTCCGCTTCCGTTCGCCTGCGCTTTAGCGCATGCATAAAGGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGTCCCTAACAACCTg                                 >  2:201095‑M1/7‑141 (MQ=255)                                                                                                          AGCCCCTAACAACCTGAGGTCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTaacaaccaaagg                              >  2:376218‑M1/1‑136 (MQ=255)                                                                                                              CCTAACAACCTGAGGTCACTACGCTTCCGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTAGGCTTCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGTCCCTAACAACCTGAGGTCAc                          <  1:129384‑M1/141‑1 (MQ=255)                                                                                                              CCTAACAACCTGAGGTCACTACGCTTCCGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGTCACTAACAACCTAAGGTCAc                          <  2:115848‑M1/141‑1 (MQ=255)                                                                                                                 AACAACCTGAGGTCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCTGTTCGCCTGCGCTTTCTCGCATGCATAAAAGCCCCTAACAACCCGAGTTCACTAc                       <  2:305554‑M1/141‑1 (MQ=255)                                                                                                                  ACAATCAGATGTTACTGCGCTTCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGTCCCTAACAACCTGAGGTCACTACg                      >  2:222389‑M1/1‑141 (MQ=255)                                                                                                                   CAACCTGAGGTCACTGCGCTCCCGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGTCCCTAACAACCTGAGGTCACTACGc                     >  1:316752‑M1/1‑141 (MQ=255)                                                                                                                      CCTGAGGTCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGTCCCTAACAACCTACGGTCActacggtcc                  <  2:332038‑M1/141‑5 (MQ=255)                                                                                                                        tGAGGTCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCTCTAACAACCGGAGGTCACTACGCTTCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGTTCCTAACAACCTGAGGTCACTACGCTTCCg                >  2:383038/1‑141 (MQ=255)                                                                                                                          agatCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGTCCCTAACAACCTGAGGTCACTACGCTTCCGtt              <  1:85156/138‑1 (MQ=255)                                                                                                                            gTCACTACGCTTCCGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGTCCCTAACAACCTGAGGTCACTACGCTTCCGTTCg            >  1:254944/1‑141 (MQ=255)                                                                                                                            gTCACTACACTCCCGTTCGGCTTCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAAGTCACTACGCTGCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGTCCCTAACAACCTGAGGTCACTACGCTTCCGTTCg            <  2:212449/141‑1 (MQ=14)                                                                                                                             tCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGTCCCTAACAACCTGAGGTCACTACGCTTCCGTTCGc           >  1:226850/1‑141 (MQ=255)                                                                                                                              cACTGCGCTTCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGTCCCTAACAACCTGAGGTCACTACGCTTCCGTTCGcc          <  1:9834/141‑1 (MQ=255)                                                                                                                               aCTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGTCCCTAACAACCTGAGGTCACTACGCTTCCGTTCGCCt         >  1:10597/1‑141 (MQ=255)                                                                                                                                      tCCGGTTCGCCTGCGGTTTCGCGACTGCATCAAAGCCCCTAACAACCTGCGGTCACTACGCTTCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGTCCCTAACAACCTGAGGTCACTACGCTTCCGTTCGCCTGCGCttt  <  2:143931/141‑1 (MQ=14)                                                                                                                                       |                                                                                                                                            TGATTTCCAATTTGGAATCATTTTACTGCTGCTTTTTATATTTGAAATACTTTCATATTGAATAGCTCCACTTGCCGTTCGCCTGCGCTTT‑GCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTGCGCTCCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGCCCCTAACAACCTGAGGTCACTACGCTTCGGTTCGCCTGCGCTTTAGCGCATGCATAAAAGTCCCTAACAACCTGAGGTCACTACGCTTCCGTTCGCCTGCGCTTT  >  CP000730/2504761‑2505033

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑