| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 2085296 = | 31 (1.170) | 29 (1.220) | 25/230 | NT | 58.8% | intergenic (‑558/‑400) | mapW2/USA300HOU_1944 | cell surface protein MapW2/hypothetical protein |
| ? | CP000730 | = 2128343 | 13 (0.550) | intergenic (+57/+1062) | int/hlgB | bacteriophage integrase/possible leukocidin subunit | |||||
AAAAAGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACTTT > CP000730/2085158‑2085434 | acatccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTg < 2:142183‑M1/2‑1 (MQ=255) catccgtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaaaccaataaatacgattgttacaaggttacaaTGt < 1:249814‑M1/3‑1 (MQ=255) gtgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCa < 1:147565‑M1/8‑1 (MQ=255) tgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCaa < 2:204187‑M1/9‑1 (MQ=255) tgtattctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtgtctaTGTATCCaa < 2:286414‑M1/9‑1 (MQ=255) cAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAAc < 1:160495/140‑1 (MQ=255) attctcatttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACt > 1:183187‑M1/129‑140 (MQ=255) ttcacatttgtgaaaagaaaaatttaaagaagaagacaaaaaaacaactaaaaatttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTg > 1:275482‑M1/128‑140 (MQ=255) atttgttagaagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGAc > 2:250922‑M1/123‑140 (MQ=255) ttAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACtttt < 1:249002/140‑1 (MQ=255) gttaaaagaaaaattaaatgacgaagacaaaaaaacaactaaaattttagaaagtatgtaacttatggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACtttt > 2:111568‑M1/119‑140 (MQ=255) ctAGCAAATTTATTATTAGTTGGTGCTCTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAATATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTCATCTACCGTTTTGTATCCAAACTGGAGACtttt < 2:158953/139‑1 (MQ=255) gCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAATATGATACTGATTTGAAGTTAGTTACTCATAACGTTTATATGTTATCGACCCTTTTGTACCCAAACTGGAGACTTTTAAc < 1:207036/140‑1 (MQ=255) gaagaaaaatttaatgaagcgtacaaaaaaacatttaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACa > 1:6677‑M1/115‑140 (MQ=255) aagaaaaatttaatgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACAt > 1:207934‑M1/114‑140 (MQ=255) aTTTATTATTAGTTGGTGCACTTACTGAAAATAGTGCCAAAGCCGAAACTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATaa < 1:137923/140‑1 (MQ=255) tttATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCGAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATTCAAACTGGAGACTTTTAACAGaaa > 1:57990/1‑140 (MQ=255) attattaGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTCTATCCAAACTGGAGACTTGTAACAAAAAAta > 1:22132/1‑139 (MQ=255) aaattaatgaagaggacaaaaaaacaaccaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAAtt > 2:3917‑M1/108‑140 (MQ=255) atttaatgaagagaacaaaaaaacaacaaaaaatttagaaagtatgtaatttagggacccattagggactccaaacccaataaacactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTa > 1:80930‑M1/107‑140 (MQ=255) taatgaagaagaaaaaaaaacaactaaaattttagaaagtatgtaatttcgggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACtt > 2:217971‑M1/104‑140 (MQ=255) atgaagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTAt < 1:58727‑M1/39‑1 (MQ=255) tgaaggggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATc > 1:272249‑M1/101‑140 (MQ=255) gTTGGTGCACTTACTGACAATAGTGGCAGAGCCGAATCTAAGAAAGATGATACTAAAAAGAAGTAAGGTAGTCATAACGTTTATATGTTATCCACCGTTCTGTATCCAAACTGGAGACTTTTATCATAAAATTaaaaaaa < 2:22203/140‑7 (MQ=255) aagaggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccctgagggactccaaacccaataaatactgttgttacaaggtttttaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCAt > 2:175299‑M1/99‑140 (MQ=255) ggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAACTTAATTATCATTCaa < 1:38460‑M1/46‑1 (MQ=255) ggacaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCaa < 1:136063‑M1/46‑1 (MQ=255) acaaaaaaacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCaaaa > 2:296805‑M1/93‑140 (MQ=255) ttACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAg > 1:49188/1‑140 (MQ=255) gaaaaTAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTaaaa > 2:90822/4‑140 (MQ=255) aacaactaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTaaaa > 1:89671‑M1/86‑140 (MQ=255) aacaactaaaagtttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTaaaa > 1:37152‑M1/86‑140 (MQ=255) actaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGc < 1:99280‑M1/59‑1 (MQ=255) actaaaattttagaaagtatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGc < 1:99284‑M1/59‑1 (MQ=255) acagCCAAAGCCGAATCTAAAAAAGACGATACTAATATGAAATTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCat < 1:38600/137‑1 (MQ=255) tGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTAGCATTCAAAAAGTAAAACAGCataa > 2:133101/1‑140 (MQ=255) aGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCaa < 1:90822/140‑1 (MQ=255) ccGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAgg < 1:92969/140‑1 (MQ=255) cGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGt > 1:90661/1‑140 (MQ=255) cGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGt > 1:98310/1‑140 (MQ=255) tatgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTtat > 2:305533‑M1/65‑140 (MQ=255) tgtaatttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATaa > 2:61254‑M1/63‑140 (MQ=255) ttagggacccattagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttat > 1:263563‑M1/57‑140 (MQ=255) atgatACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatca < 1:262932/140‑1 (MQ=255) gatACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGTATAATATCAAGGTTTATAACTttatcatt > 2:199566/1‑140 (MQ=255) gatACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTttatcatt > 2:231587/1‑140 (MQ=255) aCTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTgtctcattatc > 1:135643/1‑140 (MQ=255) ttagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaata < 2:189158‑M1/95‑1 (MQ=255) ttagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCaata > 1:41251‑M1/46‑140 (MQ=255) tagggactccaaacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTataaataa < 2:166336‑M1/96‑1 (MQ=255) tGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAataata < 2:49188/140‑1 (MQ=255) ttagtCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTAACAATAATACCTCAtata > 2:43435/1‑140 (MQ=255) aacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAACGTAAAACAGCATAATATCAAGGTTTATAAATTTATACTAAACAATAATACCTcatatc < 2:262794‑M1/107‑2 (MQ=255) aacccaataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCAtata < 1:56065‑M1/107‑1 (MQ=255) tagtCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATataa < 1:147779/140‑1 (MQ=255) cATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATataaaata < 2:300184/140‑1 (MQ=255) ataaatactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATataaaataa < 1:112276‑M1/113‑1 (MQ=255) cGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAACTTCCTTAGCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAtt < 1:74202/140‑1 (MQ=255) atactgttgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAtt < 1:63082‑M1/117‑1 (MQ=255) tgttacaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttaggga > 1:200866‑M1/17‑140 (MQ=255) atGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttaggga > 1:197568/1‑140 (MQ=255) acaaggtttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggacttt > 1:277909‑M1/13‑140 (MQ=255) caaggtttctaTGTAACCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttt < 1:236916‑M1/129‑1 (MQ=255) aTCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttt < 2:98310/140‑1 (MQ=255) aTCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttt < 2:90661/140‑1 (MQ=255) cGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGTATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggacttttta < 1:199566/140‑1 (MQ=255) aCCGTTTTGTATCCAAACTGGAGATTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttagg < 2:57990/140‑1 (MQ=255) aCCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttagg > 1:212269/1‑140 (MQ=255) ttctaTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttaggga < 1:69148‑M1/135‑1 (MQ=255) cGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttaggga > 1:48523/1‑140 (MQ=255) gTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAAttttagggactttttagggac > 2:237320/1‑140 (MQ=255) taTGTATCCAAACTGGATACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATAAATAATACCAAATATATAATAAAATtttaggctctttttagggtctt < 2:127756‑M1/138‑1 (MQ=255) taTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATtttagggactttttagggactt < 1:146104‑M1/138‑1 (MQ=255) ttGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTGAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCAATATCAATAATACCTCATATAAAATAAAATTttagggactttttagggacttt > 2:176531/1‑140 (MQ=255) | AAAAAGTTGCAACACTTGCATTAGCAAATTTATTATTAGTTGGTGCACTTACTGACAATAGTGCCAAAGCCGAATCTAAGAAAGATGATACTGATTTGAAGTTAGTTAGTCATAACGTTTATATGTTATCGACCGTTTTGTATCCAAACTGGAGACTTTTAACATAAAATTACTTATCATTCAAAAAGTAAAACAGCATAATATCAAGGTTTATAACTTTATCATTATCAATAATACCTCATATAAAATAAAATTTTAGGGACTTTTTAGGGACTTT > CP000730/2085158‑2085434 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |