New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 52489 =150 (0.790)37 (0.220) 6/266 15.6 23.0% intergenic (+99/‑574) USA300HOU_0043/USA300HOU_0044 hypothetical membrane protein/possible transcriptional regulator
?CP000730 = 52983 113 (0.670)intergenic (+593/‑80) USA300HOU_0043/USA300HOU_0044 hypothetical membrane protein/possible transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 119 total aligned reads displayed.

TCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTGGT  >  CP000730/52835‑53129
                                                                                                                                                     |                                                                                                                                                    
tCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAGTCAGGGGAATGGTTTGAGAACATCGATGGAATCACGCGa                                                                                                                                                      >  2:110072/1‑149 (MQ=11)
tCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATAAGAGGAATCGTTTGAGAACATCGTAGGAATCGCACGa                                                                                                                                                      >  2:750753/1‑149 (MQ=11)
        aTCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCACGCGattttcgcg                                                                                                                                              <  1:1236977/149‑9 (MQ=12)
            tttGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGaa                                                                                                                                          <  1:1783973/149‑1 (MQ=32)
                aaaTCATCGTAGGAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAGTAAGTGCGTTCGTTAGAAATCGTCGTAGTAATCGCGCGACAATcgcgggcactac                                                                                                                                      >  1:1362060/1‑141 (MQ=11)
                   tcatcGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTAt                                                                                                                                   >  1:1861653/1‑149 (MQ=35)
                      tcGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGt                                                                                                                                <  2:719100/149‑1 (MQ=38)
                         tagtaATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATACTATGGTAGa                                                                                                                             >  1:1698926/1‑149 (MQ=255)
                           gtaATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACg                                                                                                                           <  1:1867212/149‑1 (MQ=255)
                           gtaATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACg                                                                                                                           <  1:1088873/149‑1 (MQ=255)
                             aaTCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGt                                                                                                                         <  1:952247/149‑1 (MQ=255)
                              aTCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGtt                                                                                                                        <  1:1427620/149‑1 (MQ=255)
                                cgcgcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGACAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATcgcg                                                                                                                                              <  1:1329552/125‑1 (MQ=17)
                                cgcgcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑g                                                                                                                     <  2:1024584/149‑1 (MQ=255)
                                  cgcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAg                                                                                                                   <  1:1618349/149‑1 (MQ=255)
                                  cgcgAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAg                                                                                                                   <  2:1768477/149‑1 (MQ=255)
                                   gcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGACAATCGCGTGAAATAGTATGGTAGTCGGTTT‑GAGt                                                                                                                  >  1:1243183/1‑149 (MQ=255)
                                   gcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGt                                                                                                                  >  1:1806954/1‑149 (MQ=255)
                                   gcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGt                                                                                                                  <  1:158455/149‑1 (MQ=255)
                                      caaaTCACTTGAAATAATCACAGGAATCTTTTGAAACCCACCTAGTA‑CGCGCCCGAAAATCACATAAAATCACCAGATGAATCGTTTTAATACATCGTAGGAATCGCGCGAAAATCGCGTTAAATACTATGGTAGACGGTTT‑GATTaaa                                                                                                               <  2:561609/148‑1 (MQ=255)
                                      aaaaaccagTGAAATAATCCGAGGACCCGTTTGAAATAATCGTAGTA‑ATCGCGGGAAAACCTCGTGAAATAAGTACAGGAATCGATTAAAATCATCGTAGTAATCGCGCTAAAAGCTCGTGAAATACTATGGTAGACGGTTT‑GAGTaaa                                                                                                               <  2:472340/141‑1 (MQ=17)
                                       aaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAGAACCCGC‑CAGATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAAt                                                                                                              <  1:556431/149‑1 (MQ=17)
                                       aaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAAt                                                                                                              <  1:874646/149‑1 (MQ=255)
                                       aaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAAt                                                                                                              <  1:1593336/149‑1 (MQ=255)
                                       aaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAAt                                                                                                              <  1:1151162/149‑1 (MQ=255)
                                       aaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAAGACTATGGTAGACGGTTT‑GAGTAAAt                                                                                                              <  1:1988890/149‑1 (MQ=255)
                                             cgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATgg                                                                                                        <  1:1437430/149‑1 (MQ=255)
                                             cgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACGATGGTAGACGGTGT‑GAGTAAATTAATgg                                                                                                        <  1:1253948/149‑1 (MQ=255)
                                              gTGAAATGATTAGAGGTATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATGATCAGAGGAATCGTTTGAAATCATCGTAGGAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑a                                                                                                      <  1:1327966/149‑1 (MQ=17)
                                              gTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGGATCGTTGGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGATA‑GAGAAAATAAATGG‑a                                                                                                      >  2:1535073/1‑149 (MQ=14)
                                                    taatCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTAttt                                                                                                <  2:1687158/149‑1 (MQ=255)
                                                    taatCAGAGGAACCGTTTGAAAACATCGTAGTA‑ATAGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTAttt                                                                                                <  2:1998854/149‑1 (MQ=255)
                                                    taacCAGAGGAATCGTTTGAAATCATCCTAGTA‑ATCGCCCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTAttt                                                                                                <  2:63019/149‑1 (MQ=255)
                                                    aaatCAGAGGAATCGTTTGAAATGATCGTAGTA‑AGCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTAttt                                                                                                <  1:8132/148‑1 (MQ=255)
                                                              aaTCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGGTGGCTT‑GAGTAAATTAATGG‑AGTATGTTAatatatat                                                                                      >  2:874210/1‑149 (MQ=17)
                                                              aaTCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAAGCGTTTGAGATCATTGAAGGAATCGCGCGAAAAGCAGGGGAAATAGTATTGTAGAAGGATA‑GAGTAAGTTAATGT‑AGTAATTTAatataaat                                                                                      >  2:944733/1‑145 (MQ=14)
                                                                tCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTTTgg                                                                                    >  2:679266/1‑149 (MQ=255)
                                                                tCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATgg                                                                                    <  1:1126092/149‑1 (MQ=255)
                                                                    ttGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTg                                                                                >  1:1021972/1‑149 (MQ=255)
                                                                    ttGAAATCATCGGAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAAGATTTATGGttgg                                                                                >  1:29662/1‑147 (MQ=255)
                                                                      gAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTgga                                                                              >  1:1547693/1‑149 (MQ=255)
                                                                      gAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTgga                                                                              >  2:447942/1‑149 (MQ=255)
                                                                       aaaTCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATGAATGG‑AGTGTCTTAATATTAACGGTTTggag                                                                             >  2:1809660/1‑149 (MQ=18)
                                                                       aaaGCATCGTAGTA‑ATCGCGCGAAAAACGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTggag                                                                             <  1:249538/149‑1 (MQ=255)
                                                                           catcGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAAt                                                                         <  1:762780/149‑1 (MQ=255)
                                                                           catcGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAAt                                                                         <  1:763562/149‑1 (MQ=255)
                                                                               gtagtc‑ATCGCGCCAATATCGCGTGAAATAATCAGGGGAGTCGTTTGAAATCATCGTAGTAATCGCGCGAAGATCGCGTGAAATTCTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCg                                                                     <  1:280816/149‑1 (MQ=25)
                                                                               gtagta‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCg                                                                     <  1:1659827/149‑1 (MQ=255)
                                                                                 agta‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTACTGGTAATA‑TTTAATATTTATGGTTTGGAGGAATTGCGtt                                                                   <  1:1471929/149‑1 (MQ=21)
                                                                                 agta‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTAGGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGtt                                                                   <  1:1297262/149‑1 (MQ=255)
                                                                                 agta‑ATCGCGCGAAAATCGCGGGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGtt                                                                   <  1:793656/149‑1 (MQ=255)
                                                                                   ta‑ATCGCGCGAAAATCGCGTGATATAATCAGAGGAAGCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑CGGAGCTTAATATTTATGGTTTGGAGGAATTGCGTTGc                                                                 <  1:1985661/149‑1 (MQ=21)
                                                                                   ta‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGc                                                                 >  2:351545/1‑149 (MQ=255)
                                                                                   ta‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGc                                                                 >  1:628928/1‑149 (MQ=255)
                                                                                   ta‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGc                                                                 >  2:657524/1‑149 (MQ=255)
                                                                                   ta‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGc                                                                 >  2:906831/1‑149 (MQ=255)
                                                                                   ta‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTAGTTTAATATTTATGGTTTGGAGGAATTGCGTTGc                                                                 >  1:1236751/1‑149 (MQ=255)
                                                                                    a‑aTCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCa                                                                <  1:1942553/149‑1 (MQ=255)
                                                                                    a‑aTCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCa                                                                <  1:856259/149‑1 (MQ=255)
                                                                                      aTCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGCATTTTAATGTTTATGGTTTGGAGGAATTGCGTTGCAt                                                               >  1:209407/1‑149 (MQ=255)
                                                                                        cgcgcgAAGATCGCGTGAAATAGTCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATag                                                             <  1:982254/149‑1 (MQ=255)
                                                                                        cgcgcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATag                                                             >  1:48688/1‑149 (MQ=255)
                                                                                        cgcgcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATaa                                                             >  2:357538/1‑148 (MQ=255)
                                                                                             gAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGaaa                                                        <  1:750753/149‑1 (MQ=255)
                                                                                             gAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGaaa                                                        <  1:934620/149‑1 (MQ=255)
                                                                                             gAAAATCGCGGGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGaaa                                                        <  1:241728/149‑1 (MQ=255)
                                                                                             gAAAATCGCCTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGaaa                                                        <  1:110072/149‑1 (MQ=255)
                                                                                              aaactagacgaaaaGAAGCAAAGGAATCTGTTGATATTAGCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAg                                                       <  1:452991/138‑1 (MQ=37)
                                                                                              aaaaTCGCGTTAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAg                                                       <  1:1914786/149‑1 (MQ=255)
                                                                                              aaaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAg                                                       <  1:1242847/149‑1 (MQ=255)
                                                                                              aaaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAg                                                       <  1:1507407/149‑1 (MQ=255)
                                                                                              aaaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTGGGAGGAATTGCGTTGCATGGAGaagg                                                       >  2:1596669/1‑147 (MQ=255)
                                                                                              aaaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATCTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAg                                                       <  1:970423/149‑1 (MQ=255)
                                                                                              aaaaTCGCGTGAAATAATCAGAGGAAGCGTTTGAAAGCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAg                                                       <  2:387905/149‑1 (MQ=255)
                                                                                              aaaaTCACGTGAAATAAACAGAGGAATAGTTTCAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAg                                                       <  2:1668037/149‑1 (MQ=255)
                                                                                               aactctcgTGAAATAATCAGAGGAATCTCTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGTAATTGCGTTGCATAGTGAAAGt                                                      <  2:1362060/143‑1 (MQ=37)
                                                                                                aaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTa                                                     <  1:1903414/149‑1 (MQ=255)
                                                                                                   cgcgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAat                                                  <  1:663912/149‑1 (MQ=255)
                                                                                                          aataatCAGAGGAATCGTTTGAAATCAGCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATaga                                           <  1:938949/149‑1 (MQ=255)
                                                                                                          aataatCAGACGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAAGCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATAGTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATaga                                           <  1:694899/149‑1 (MQ=255)
                                                                                                              atCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGtat                                       >  2:81959/1‑149 (MQ=255)
                                                                                                                cAGAGGAATCGTTTGAAATCATCGTAGTAACCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCATTGCATAGAGAAAGTAAATATATAGAGTATaa                                     <  1:1276286/149‑1 (MQ=255)
                                                                                                                    ggAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGaaa                                 >  1:32623/1‑149 (MQ=255)
                                                                                                                         cGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTCTTGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACg                            >  1:462518/1‑149 (MQ=255)
                                                                                                                            ttGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAc                                                                                                                                      <  2:953063/42‑1 (MQ=32)
                                                                                                                            ttGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAc                                                                                                                                      <  2:821835/42‑1 (MQ=32)
                                                                                                                            ttGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAAGGG‑AGTAATTTAATATTTATGAGTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGGAATAGAAATCACGaaa                         >  2:1849974/1‑149 (MQ=38)
                                                                                                                             tGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGaaaa                        <  2:1136539/149‑1 (MQ=255)
                                                                                                                              gAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAg                       >  2:1804164/1‑149 (MQ=255)
                                                                                                                              gAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAg                       >  1:1505732/1‑149 (MQ=255)
                                                                                                                               aaaTCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAgg                      <  2:1123121/149‑1 (MQ=255)
                                                                                                                                aaTCATTGTAGTAATCGGGCGAAAATCGCGTGAACTACTATGGTCGGAGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGa                     <  2:909024/149‑1 (MQ=255)
                                                                                                                                aaTCATCGTAGTAATCGCGCGAAAGTCGTGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGa                     <  1:1139798/149‑1 (MQ=255)
                                                                                                                                aaTCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGa                     <  2:1427366/149‑1 (MQ=255)
                                                                                                                                aaTCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGa                     <  1:795857/149‑1 (MQ=255)
                                                                                                                                 atcatcGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGAt                    <  1:854840/149‑1 (MQ=255)
                                                                                                                                    atcGTAGTAATCGCGCGAAAATCGCGTGAAATACGATGGTCGTCGGTTTCGAG‑AGATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTAt                 <  1:942253/149‑1 (MQ=255)
                                                                                                                                           taATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGa          >  1:1973957/1‑149 (MQ=255)
                                                                                                                                            aaTCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGat         <  2:48688/149‑1 (MQ=255)
                                                                                                                                                   cgAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTGGt  <  2:496786/149‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
TCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTA‑ATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTT‑GAGTAAATTAATGG‑AGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGATATTTGGT  >  CP000730/52835‑53129

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.