BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 800928	211 (1.120)	6 (0.030)	5/282	17.0	3.0%	intergenic (+62/‑289)	hisC1/USA300HOU_0748	histidinol‑phosphate transaminase/hypothetical protein
*	?	CP000730	801948 =	183 (1.020)	6 (0.030)	5/282	17.0	3.0%	intergenic (+189/+435)	USA300HOU_0748/dgkA1	hypothetical protein/possible diacylglycerol kinase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 189 total aligned reads displayed.

ATAGGCTATAAAGTAATTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGT  >  CP000730/801800‑802093

aTAGGCTATAAAGTTATTGTGACTGTGATGCACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGCCTGCGGGGCCCCAACATAGAGAACTTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACa                                                                                                                                                    <  1:1505662/149‑1 (MQ=37)

 tAGGCTGAAAGGTAATTGTGAATGAGATGATCTTTGATGTCTTAGACACTACAACACTAAATTGGCAGTAGTTGACTGCGGGGCCCCTACATAGAGAAATTGGAACGACAATTTATACAGACAATGCAAGTTGGGGTGGGCTCCAACAt                                                                                                                                                   <  2:598719/149‑1 (MQ=25)

 tAGGCTATAAAGTAATTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACAt                                                                                                                                                   <  2:963518/149‑1 (MQ=255)

  aGGCTATAAAGTAATTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATa                                                                                                                                                  <  2:87425/149‑1 (MQ=255)

     cTATAAAGTAATTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAg                                                                                                                                               >  2:1584826/1‑149 (MQ=255)

          aaGTAATGGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATa                                                                                                                                          <  1:559038/149‑1 (MQ=255)

           aGTAATTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATAc                                                                                                                                         >  1:1946119/1‑149 (MQ=255)

              aaTTGTGACTGAGCTGAACTTTTAAGTCCTAGACACTACAACACTATAATGGCAGTAGTCGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACttt                                                                                                                                      <  2:656372/149‑1 (MQ=25)

                ttGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCTAACATAAAGAAATACttttt                                                                                                                                    <  1:1415305/149‑1 (MQ=255)

                ttGTGACTGAGATGAACTTTTAGGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACttttt                                                                                                                                    <  1:443450/149‑1 (MQ=255)

                 tgtgACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTc                                                                                                                                   >  2:444337/1‑149 (MQ=255)

                    gACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCttt                                                                                                                                <  2:292225/149‑1 (MQ=255)

                    aaCTGAGATGAAGCTTTAAGTCTTGGACACTACAACACTACATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCttt                                                                                                                                <  2:1794056/148‑1 (MQ=21)

                     aCTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTa                                                                                                                               >  1:1318951/1‑149 (MQ=255)

                     aCTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTa                                                                                                                               >  1:853889/1‑149 (MQ=255)

                       ggggattagctgttATGTCGTGGACACTACAACGCTATACTGGGAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGa                                                                                                                             <  2:1961647/137‑1 (MQ=18)

                         agaTGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGaaa                                                                                                                           <  1:1597855/149‑1 (MQ=255)

                           ataaaCTTTTATCACTTAGACACTACAACACCAGATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAAtt                                                                                                                         <  2:1240225/146‑1 (MQ=21)

                            tGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTa                                                                                                                        >  1:550444/1‑149 (MQ=255)

                            tGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTa                                                                                                                        >  1:436601/1‑149 (MQ=255)

                              aaCTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAgg                                                                                                                      >  2:1288122/1‑148 (MQ=255)

                                     aTGTCTTAGACACTACAACACGATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCtt                                                                                                               <  1:1331740/149‑1 (MQ=255)

                                      tGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGATGGGGTGGGCCCCAACATAAAGAAATACTTTGTCTTTAGAAAGTAGTACTTCTTa                                                                                                              >  1:1225603/1‑149 (MQ=255)

                                      tGTCTTAGACACTAAAACACTACATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTa                                                                                                              <  1:1789331/149‑1 (MQ=255)

                                        tCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAGTTAATATTTCTTCTg                                                                                                            >  1:109533/1‑149 (MQ=255)

                                         cTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAAATAGTATTTCTTCTGc                                                                                                           >  2:108424/1‑149 (MQ=255)

                                          ttAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACATATGCGTTAGAAATTAGTATTTCTTATGCa                                                                                                          >  2:903354/1‑149 (MQ=255)

                                           tAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCAt                                                                                                         >  2:543618/1‑149 (MQ=255)

                                              acacTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAATTACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAg                                                                                                      <  2:1838107/149‑1 (MQ=255)

                                                acTATAACAGTATATTGGCAGTAGCTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAgtg                                                                                                    <  2:1067911/149‑1 (MQ=255)

                                                   acaacaCTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATGCGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACAAAAAGAAATACTTTTTCTTTGGAAATGAGTATTTCTTATGAATGAATGTa‑a                                                                                                >  2:1980236/1‑149 (MQ=18)

                                                        acTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGGGTA‑ACTCAt                                                                                           >  1:396205/1‑149 (MQ=255)

                                                         cgatagTGGCAGTAGTTGACTGCGGGGCCCAAACAGAGAGAAAGTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATACAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATg                                                                                          <  2:767446/147‑1 (MQ=18)

                                                         cTATTTTGGCAGTAGTTGACTGCGGGGCCCCAGCATGGAGATATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTTTTTTGCAGGCGTGTC‑AATCATg                                                                                          <  2:927098/149‑1 (MQ=18)

                                                         cTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATg                                                                                          <  1:429742/149‑1 (MQ=255)

                                                         cTATATTGGCAGTAGTTGACTGCCGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATg                                                                                          <  2:61495/149‑1 (MQ=255)

                                                             atTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGT‑TACACTCATGCAta                                                                                      <  1:836718/149‑2 (MQ=255)

                                                               tGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCa                                                                                    >  2:1408136/1‑149 (MQ=255)

                                                               tGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCa                                                                                    >  1:1816745/1‑149 (MQ=255)

                                                                ggCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCat                                                                                   >  2:979019/1‑149 (MQ=255)

                                                                ggCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCat                                                                                   >  2:1007662/1‑149 (MQ=255)

                                                                 gCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCata                                                                                  >  2:743457/1‑149 (MQ=255)

                                                                 gCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTATTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTAATGCATTCatt                                                                                  >  2:1326964/1‑148 (MQ=255)

                                                                  cAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTTTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCatat                                                                                 >  1:1372254/1‑149 (MQ=255)

                                                                  cAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCCTGCATTCattt                                                                                 >  1:616306/1‑147 (MQ=255)

                                                                  cAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCatat                                                                                 >  2:1416418/1‑149 (MQ=255)

                                                                  cAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCatat                                                                                 >  1:1727798/1‑149 (MQ=255)

                                                                   agtagtTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATAtt                                                                                <  1:503304/149‑1 (MQ=255)

                                                                    gtagtTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAACTACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATAttt                                                                               <  1:1148597/149‑1 (MQ=255)

                                                                    gtagtTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATAttt                                                                               >  1:1593285/1‑149 (MQ=255)

                                                                        ttGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTaa                                                                           >  1:445727/1‑149 (MQ=255)

                                                                              gCGGGGCCCCAATATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTacac                                                                     >  1:1356985/1‑149 (MQ=255)

                                                                                  ggCCCCAACCTAGAGAAATTGGAACGCCAACTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTa                                                                 <  1:333829/149‑1 (MQ=255)

                                                                                  ggCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTa                                                                 <  1:1420664/149‑1 (MQ=255)

                                                                                      ccAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCtg                                                             <  1:1962293/149‑1 (MQ=255)

                                                                                         aCATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGa                                                          <  1:94775/149‑1 (MQ=255)

                                                                                          cataaccaaaTTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTCTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGAc                                                         <  1:829721/142‑1 (MQ=255)

                                                                                          cATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACCTAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACCCATTAGCTGTGAc                                                         <  1:1177578/149‑1 (MQ=255)

                                                                                          cATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGAc                                                         <  1:1631402/149‑1 (MQ=255)

                                                                                          aaTAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCAAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGAc                                                         <  2:288937/148‑1 (MQ=255)

                                                                                            tAGAGAAATTGGAAGGCCAATTTCTACAGAAAAGCCAAGGGGGGGTGGACCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTa                                                       >  1:1472356/1‑149 (MQ=21)

                                                                                              gagaAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAAt                                                     <  2:730664/149‑1 (MQ=255)

                                                                                              gagaAACTGGAACGCCAATTTCGACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAAt                                                     <  2:276270/149‑1 (MQ=255)

                                                                                               agaAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATg                                                    >  1:739291/1‑149 (MQ=255)

                                                                                                   aggtgcaCGGCAATTTCATCAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATaa                                                <  2:2000406/143‑1 (MQ=18)

                                                                                                   aatGGAACGCCAATTTTTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATaa                                                <  2:388265/147‑1 (MQ=255)

                                                                                                    ttGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATaaa                                               >  1:595595/1‑149 (MQ=255)

                                                                                                    ttGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATaaa                                               >  1:1238984/1‑149 (MQ=255)

                                                                                                    ttGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACATGTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑GCTCATGACTAGATATTTTTAAGTACACATTAGCTGTGACTATTGATaaa                                               >  2:322128/1‑149 (MQ=18)

                                                                                                       gAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTCCGCATTAGCTTGGACTAATGATAAAGaa                                            >  1:361468/1‑149 (MQ=255)

                                                                                                       gAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGaa                                            <  2:1215785/149‑1 (MQ=255)

                                                                                                       gAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACCTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGaa                                            >  1:1890823/1‑149 (MQ=255)

                                                                                                          cGCCAATTTCTACAGACAATGCAAGTTGGGGTCGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCg                                         <  2:1599293/149‑1 (MQ=255)

                                                                                                           gCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAATAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGc                                        <  1:756534/149‑1 (MQ=255)

                                                                                                           cccAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGc                                        <  2:1162722/148‑1 (MQ=255)

                                                                                                              aaTTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTAc                                     <  2:364653/149‑1 (MQ=255)

                                                                                                                tttCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACAt                                   <  1:602476/149‑1 (MQ=255)

                                                                                                                 ttCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATATTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATa                                  <  2:258938/149‑1 (MQ=255)

                                                                                                                 ttCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATa                                  <  2:676486/149‑1 (MQ=255)

                                                                                                                  tCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTGTTGTAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGTTAAAGAATCGCTACATaa                                 >  1:1054541/1‑149 (MQ=255)

                                                                                                                   ttACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTTTCTTTGACTAATGATAAAGAATCGCTACATaat                                <  2:430171/148‑1 (MQ=255)

                                                                                                                      cAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATaatcaa                             <  2:595595/149‑1 (MQ=255)

                                                                                                                       aGACAATGCAAGTTGGGGTGGGCCCCAACATAAACAAATACTTTTTCTTTAGAAAGTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATaaccaat                            >  2:1240252/1‑149 (MQ=255)

                                                                                                                        gACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATaatcaatc                           <  2:797674/149‑1 (MQ=255)

                                                                                                                                 aGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGt                  >  1:656010/1‑149 (MQ=255)

                                                                                                                                 aGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTAAACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGt                  >  2:665688/1‑149 (MQ=255)

                                                                                                                                   ttggggcccaccccAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATACTCAATCATTAGTCGTTc                >  1:1510872/11‑149 (MQ=255)

                                                                                                                                   ttGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATCTTTTTAAGTCATCATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTc                <  2:1313490/149‑1 (MQ=255)

                                                                                                                                   ttGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTc                >  1:1325752/1‑149 (MQ=255)

                                                                                                                                   ttGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTc                <  2:1357348/149‑1 (MQ=255)

                                                                                                                                      gggTGTGCCACAACATAAATAAATACTTTTTCTTTAGAAATTAATATTTCTTATGCAGGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCttt             <  2:208866/149‑1 (MQ=18)

                                                                                                                                      gggTGGTCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCttt             <  2:1701088/149‑1 (MQ=255)

                                                                                                                                      gggTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCttt             <  1:1382437/149‑1 (MQ=255)

                                                                                                                                         tGGGCCCCAACATAAAGAAATACTTTTTCTTGAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATc          <  1:333116/149‑1 (MQ=255)

                                                                                                                                           ggCCCCAACATAAAGAAATCCTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCAt        <  1:1030261/149‑1 (MQ=255)

                                                                                                                                             ccccAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGAATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCAttt      <  1:576753/149‑1 (MQ=255)

                                                                                                                                               ccAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTTAGTACACTTTAGCTGTTACTAATGATAAAGAATCGCTACATAATCAATAATTAGTCTTTCTTTATCATTTcc    >  2:1449852/1‑149 (MQ=18)

                                                                                                                                               ccAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGCTAATGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATATcc    >  2:1892946/1‑149 (MQ=255)

                                                                                                                                               ccAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAACGAATCGCTACATAATCAATCATCAGTCGTGCTTTATCATTTcc    >  2:1656987/1‑149 (MQ=255)

                                                                                                                                                 aaCATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGt  <  2:601912/149‑1 (MQ=255)

ATAGGCTATAAAGTAATTGTGACTGAGATGAACTTTTATGTCTTAGACACTACAACACTATATTGGCAGTAGTTGACTGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACATAAAGAAATACTTTTTCTTTAGAAATTAGTATTTCTTATGCATGAGTGTA‑ACTCATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGT  >  CP000730/801800‑802093

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.