Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007301,929,8430A.70.0% 1313.2 / inf 777intergenic (‑926/‑242)USA300HOU_1794/USA300HOU_1796hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (123/108);  new base . (312/228);  total (437/340)
Fisher's exact test for biased strand distribution p-value = 2.67e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 778 total aligned reads displayed.

ATATCTATTCTCATAGAATTTGTCCAATTAAGTGTAGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTA‑GAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAAT  >  CP000730/1929695‑1929989
                                                                                                                                                     |                                                                                                                                                       
   tCTATTCTCATAGAATTTGTCCAATTAAGTGTAGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTA‑GAGTCGCCTATCTCTCAGGCGTCAATTTAGAc                                                                                                                                                      >  1:1920668/1‑149 (MQ=255)
   tCTATTCTCATAGAATTTGTCCAATTAAGTGTAGACGAATCAATCTATCAGCTAGAATCATGTAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTA‑GAGTCGCCTATCTCTCAGGCGTCAATTTAGaa                                                                                                                                                      >  2:1217664/1‑148 (MQ=255)
               gAATTTGTCCAATTAAGTGTAGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTA‑GAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGaggagg                                                                                                                                          >  2:1231625/1‑149 (MQ=255)
               gAATTTGTCCAATTAAGTGTAGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTA‑GAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGaggagg                                                                                                                                          <  1:1500779/149‑1 (MQ=255)
                                tgtAGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTA‑GAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCtt                                                                                                                    >  1:704193/1‑149 (MQ=255)
                                tgtAGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTAAATTTACCGATGATATAATAGTA‑GAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCtt                                                                                                                    >  2:1135057/1‑149 (MQ=255)
                                 gtAGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGGATATTTGCCGATGATATAATAGTA‑GAGTCGCCTGTCTATCAGGCGTCAATTTATACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCttt                                                                                                                   >  1:1161144/1‑148 (MQ=255)
                                  tAGACGATTCAATCTATCAGCTAGAATCATATAACTTAACAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTA‑GAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTAt                                                                                                                  >  1:1905661/1‑149 (MQ=255)
                                     aCGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTA‑GAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTAtttt                                                                                                               >  1:1080310/1‑149 (MQ=255)
                                        aTTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTA‑GAGTCGCCTATCTCTCAGGCGTCGATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGt                                                                                                            >  2:497777/1‑149 (MQ=255)
                                        aTTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTA‑GAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGt                                                                                                            >  1:1697115/1‑149 (MQ=255)
                                                 aTCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTA‑GAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGCG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCAcatcat                                                                                                   >  1:945822/1‑149 (MQ=255)
                                                       tAGAATCATATAACTTATCAGAAGCAAGGTACTGTGCTTGTATATTTGCCGATGATATAATAGTA‑GAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCAcc                                                                                             <  2:158291/149‑1 (MQ=255)
                                                          aaTCATATAACTTATCAGAAGCACGTAACAGGACAGGTATATTTGCCGATGATATAATAGTA‑GAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGt                                                                                          >  2:1935137/1‑149 (MQ=255)
                                                                    cTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTA‑GAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGc                                                                                >  2:1605048/1‑149 (MQ=255)
                                                                         cAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTA‑GAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGc                                                                           <  2:1149913/149‑1 (MQ=255)
                                                                               gaagtagatatgCTTGTATATTCACAGATGGTATAATAATA‑GAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCg                                                                    >  2:1398141/11‑149 (MQ=255)
                                                                               gaaatagatatgCTTGTATACTCACCGATGGTATAATAACA‑GATTCGCCTATCTCTCATGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑C‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCg                                                                    <  2:57857/139‑1 (MQ=255)
                                                                                aagtagatatgCTTGTATATTCACAGATGGTATAATAATA‑GAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTGC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGt                                                                   >  2:1435549/10‑149 (MQ=255)
                                                                                aagtagatatgCTTGTATATTCACAGATGGTATAATAATA‑GAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGt                                                                   <  2:1647199/140‑1 (MQ=255)
                                                                                 agtagatatgCTTGTATATTCACAGATGGTATAATAATA‑GAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGta                                                                  >  1:1574083/9‑148 (MQ=255)
                                                                                 agtagatatgCTTGTATATTCACAGATGGTATAATAATA‑GAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGta                                                                  <  1:977381/141‑2 (MQ=255)
                                                                                  gtagatatgCTTGTATATTCNCNGATAGTATAATAATA‑GAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtat                                                                 <  1:1135194/142‑3 (MQ=255)
                                                                                  gggACTGTGCTTGTATACTTGCCGATGATATAATAGTA‑GAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGtt                                                                  <  2:1337523/147‑1 (MQ=255)
                                                                                    agatatgCTTGTATATTCACAGATGGTATAATAATA‑GAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCCGTCATCAGTGGCTGTGCTGTTGCGtatta                                                               >  2:1030275/6‑148 (MQ=255)
                                                                                      atatgCTTGTATATTCACAGATGGTATAATAATA‑GAGTCGCTTCTTTATCATGCGTCCATT‑‑GACGAGGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattata                                                             >  1:472186/4‑146 (MQ=255)
                                                                                      atatgCTTGTATATTCACAGATGGTATAATAATA‑GAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGGGGCTGTGCTGTTGCGtattata                                                             >  1:652121/4‑143 (MQ=255)
                                                                                        gtgCTTGTATATTTGCCGATGATATAATAGTA‑GAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTc                                                            >  1:1962755/1‑149 (MQ=255)
                                                                                          gCTTGTATATTTGCCGATGATATAATAGTA‑GAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCtt                                                          <  1:1421751/149‑1 (MQ=255)
                                                                                          gCTTGTATATTCACAGATGGTATAATAATA‑GAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattatactta                                                         <  1:1004008/149‑11 (MQ=255)
                                                                                          gCTTGTATATTCACAGATGGTATAATAATA‑GAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattatactta                                                         >  2:1772354/1‑139 (MQ=255)
                                                                                          gCTTGTATATTCACAGATGGTAAAATAATA‑GAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattatactta                                                         >  1:1042433/1‑139 (MQ=255)
                                                                                           cTTGTATATTCACAGAGGGTATAATAATA‑GAGTCGCCTATCTCTCAGGCGTCAATT‑‑GAAGAAGAGAGGAGGTG‑CA‑TTACT‑T‑TGCTAATCATTTTGGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTAt                                                        >  2:1475721/1‑149 (MQ=255)
                                                                                            ttGTATATTCACAGATGGTATAATAATACTAGT‑GCTTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGtattatacttact                                                       <  2:414735/149‑10 (MQ=255)
                                                                                               tataTTCACAGATGGTATAATAATA‑GAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGc                                                    <  1:1637308/149‑1 (MQ=255)
                                                                                               tataTTCACAGACGATATAATAATA‑GAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGc                                                    <  2:52544/149‑1 (MQ=255)
                                                                                                  atacacagagagtataATAATA‑GAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCtta                                                 >  2:1735552/13‑147 (MQ=255)
                                                                                                   tttacggatggtATAATAATA‑GAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAg                                                <  2:261563/143‑1 (MQ=255)
                                                                                                   tttGCCGATGATATAATAGGA‑GAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTaa                                                 <  1:675109/149‑1 (MQ=255)
                                                                                                   ttcacagatggtATAATAATA‑GAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGGAGAGAGGAGGTG‑CA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTTTTCGCTTAg                                                >  1:1851317/7‑149 (MQ=255)
                                                                                                   ttcacagatggtATAATAATA‑GAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCttag                                                >  1:773635/7‑146 (MQ=255)
                                                                                                   ttcacagatggtATAATAATA‑GAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCttag                                                >  1:1776303/7‑146 (MQ=255)
                                                                                                   ttcacagatggtATAATAATA‑GAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCttag                                                >  2:392250/7‑146 (MQ=255)
                                                                                                    tcacagatggtATAATAATA‑GAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGGGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAga                                               >  1:911530/6‑148 (MQ=255)
                                                                                                    tcacagatggtATAATAATA‑GAGTCGCCTATCTCTCAGGCGTCAAGT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGt                                               <  2:803593/144‑1 (MQ=255)
                                                                                                    tcacagatggtATAATAATA‑GAGTCGCCTATCTCTCAGGAGTCAATT‑‑GACGAAGAGAGGAGGGGCAA‑TAC‑T‑T‑TGCTAATCATTTTCGTTCACCTCATAGCACCAGTCATCAGTGGCTGTGCTCTTGCGTATTATACTTATTGGCTTAGt                                               >  1:1228065/6‑149 (MQ=255)
                                                                                                     cacagatggtATAATAATA‑GAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTa                                              >  2:1905952/5‑149 (MQ=255)
                                                                                                      acagatggtATAATAATA‑GAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAgcaa                                             >  2:760377/4‑146 (MQ=255)
                                                                                                       cagatggtATAATAATA‑GAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaaa                                            <  1:1808637/147‑3 (MQ=255)
                                                                                                       cagatggtATAATAATA‑GAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTaaa                                            >  2:1553932/3‑147 (MQ=255)
                                                                                                        agatggtATAATAATA‑GAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAAc                                           >  1:1654069/2‑149 (MQ=255)
                                                                                                          atggtgttattgta‑gAGTCGTGTATCTTTCATGCTTCACTTTATACGCAGAGAGGAGGCG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCAGCAGTGGCCGTGCCATTGCGTTTCTTTCTTATTGGCTAAGTAGACg                                          <  2:1494976/138‑1 (MQ=255)
                                                                                                          atgatATAATAGTA‑GAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGTACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACg                                          <  1:345446/149‑1 (MQ=255)
                                                                                                          atgatATAATAGTA‑GAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACg                                          >  2:1535425/1‑149 (MQ=255)
                                                                                                           tggtataATAATA‑GAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATGCTTATTGGCTTAGTAAACGCa                                        <  1:2008890/146‑1 (MQ=255)
                                                                                                           tggtataATAATA‑GAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑C‑TTTGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTCGTAAACGCa                                        >  2:1367048/4‑149 (MQ=255)
                                                                                                           tgatATAATAGTA‑GAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGc                                         <  2:1701809/149‑1 (MQ=255)
                                                                                                               ataataata‑GAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaa                                    <  2:971706/149‑4 (MQ=255)
                                                                                                               ataataata‑GAGTCGCCTATCTCTAAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaa                                    >  1:1024161/1‑146 (MQ=255)
                                                                                                                taataaTA‑GAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaa                                   <  2:296045/149‑5 (MQ=255)
                                                                                                                taataaTA‑GAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaa                                   <  2:233650/149‑5 (MQ=255)
                                                                                                                 aataatA‑GAGTGGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaat                                  <  2:117704/149‑6 (MQ=255)
                                                                                                                 aaataataaggTCGCCTATCTCTCAGGGGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCTTTTTCGTTCACATCATAGAACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaa                                   <  2:913108/139‑5 (MQ=255)
                                                                                                                   taata‑gAGTCGCCTATTTCTCAGGCGTAAATT‑‑GCCGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTTATCATTTTCGTTCACATCATAGCATCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataa                                <  2:608075/146‑8 (MQ=255)
                                                                                                                   taata‑gAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataa                                >  1:429779/4‑142 (MQ=255)
                                                                                                                    aata‑gAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataat                               >  1:744151/3‑141 (MQ=255)
                                                                                                                     ata‑gAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatt                              >  2:1835406/2‑140 (MQ=255)
                                                                                                                     ata‑gAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatt                              >  1:858566/2‑140 (MQ=255)
                                                                                                                     ata‑gAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatt                              >  2:459779/2‑140 (MQ=255)
                                                                                                                     ata‑gAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTAGACTTATTGGCTTAGTAAACGCaacaaataatt                              >  1:1340367/2‑140 (MQ=255)
                                                                                                                     ata‑gAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatt                              >  1:1618910/2‑140 (MQ=255)
                                                                                                                     ata‑gAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatt                              >  1:1882330/2‑140 (MQ=255)
                                                                                                                      ta‑gAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAg                                             <  1:529364/134‑1 (MQ=255)
                                                                                                                      ta‑gAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATa                              >  2:883357/1‑149 (MQ=255)
                                                                                                                      ta‑gAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATGGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACGAAATa                              >  1:570041/1‑149 (MQ=255)
                                                                                                                      ta‑gAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTACTCATTTTCGTTCACATCATCGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaccaaataatta                             >  1:894457/1‑138 (MQ=255)
                                                                                                                      ta‑gAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataatta                             >  2:1999290/1‑139 (MQ=255)
                                                                                                                      ta‑gAGTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATGATACTTATTGACTTAGTAAACGCaacaaataatga                             >  1:385443/1‑139 (MQ=255)
                                                                                                                       a‑gagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaa                            >  1:60797/1‑138 (MQ=255)
                                                                                                                       a‑gagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGAAAACGCAACACATAAttaa                            >  2:639256/1‑146 (MQ=255)
                                                                                                                         gagTCGCCTATGCCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTGCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaaa                           >  2:678685/1‑137 (MQ=255)
                                                                                                                         gagTCGCCTATCTTTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGATGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat                           <  2:1300502/149‑13 (MQ=255)
                                                                                                                         gagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat                           >  1:1486181/1‑137 (MQ=255)
                                                                                                                         gagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat                           >  2:1861085/1‑137 (MQ=255)
                                                                                                                         gagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaaa                           >  2:349809/1‑137 (MQ=255)
                                                                                                                         gagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGATGTAGGTTATGATACTTATTGGCTTAGTAAACGCaacaaataattaat                           >  1:1544409/1‑137 (MQ=255)
                                                                                                                         gagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat                           >  1:307524/1‑137 (MQ=255)
                                                                                                                         gagTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTA‑CTT‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaat                           >  1:290/1‑137 (MQ=255)
                                                                                                                          agTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGAAATACAAAATAGGt                           >  1:1191024/1‑149 (MQ=255)
                                                                                                                          agTCGCCTATCTCTCAGGCGTCAATT‑‑GATGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TCCTAATCATTTTCGGTCACATCATAGCACCAGTCATCAGTGGCGGTGCTGTTGCGTATTATACGTATTGGCTTAGTAAACGCaacaaataattaata                          >  2:1097273/1‑136 (MQ=255)
                                                                                                                          agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                          >  1:1316921/1‑136 (MQ=255)
                                                                                                                          agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                          >  1:804450/1‑136 (MQ=255)
                                                                                                                          agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                          >  2:713894/1‑136 (MQ=255)
                                                                                                                          agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CATTAC‑T‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                          >  2:84137/1‑136 (MQ=255)
                                                                                                                          agTCGCCTATCTCTCAGGCGTCAATT‑‑GACGAAGAGAGGAGGTG‑CA‑TTACT‑T‑TGCTAATCATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCTGTTGCGTATTATACTTATTGGCTTAGTAAACGCaacaaataattaata                          >  2:125682/1‑136 (MQ=255)
                                                                                                                           gtctgctctctctcGGGCCTCAATTTAGACGCCGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCACCAGTGGCTGGGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTg                          <  1:124879/141‑1 (MQ=255)
                                                                                                                           gTCGCCTATCTCTCAGGCGTCAATGTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTg                          <  1:258630/149‑1 (MQ=255)
                                                                                                                            tCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGa                         <  1:1742088/149‑1 (MQ=255)
                                                                                                                                   tctctcAAGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAg                  >  1:1461144/1‑149 (MQ=255)
                                                                                                                                                   ttAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAGGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAAt  >  1:1391863/1‑149 (MQ=255)
                                                                                                                                                     |                                                                                                                                                       
ATATCTATTCTCATAGAATTTGTCCAATTAAGTGTAGACGATTCAATCTATCAGCTAGAATCATATAACTTATCAGAAGCAAGTGACTGTGCTTGTATATTTGCCGATGATATAATAGTA‑GAGTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTG‑TA‑TAA‑G‑G‑TGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGACATATAGCCGCACCAATAAAAAT  >  CP000730/1929695‑1929989

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑