New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	512620 =	32 (0.670)	30 (0.860) +TTATCTTGTCCATTTTATTTTTTAACCAAAATTTGATTAA	23/220	0.3	56.2%	intergenic (+688/‑173)	recR/rrs1	recombination protein RecR/16S ribosomal RNA
	?	CP000730	1998278 =	NA (NA)					intergenic (‑6/+5)	USA300HOU_t0050/rrf4	tRNA‑Val/5S ribosomal RNA

TCTTAGGATAAGGGCGTTCAGTACAGATGACAAAGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTAGTATTTATGAGCTA  >  CP000730/512470‑512769                                                                                                                                                       |                                                                                                                                                      tagcaaggaggtcacacctgttcccatgccgaacacagaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaa                                                                                                                                                       <  2:184696‑M1/1‑1 (MQ=255) tagcaaggaggtcacacctgttcccatgccgaacacagaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagctttttaatcaaattttggttaaaaaataaaatggacaagataaa                                                                                                                                                       <  2:6057‑M1/1‑1 (MQ=255) tagcaaggaggtcacacctgttcccatgccgaacacagaaggtaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaccgttgccaggcagttttttaatcctattttggttaagaaataaaatgcacaatataaa                                                                                                                                                       <  2:260933‑M1/1‑1 (MQ=255)   gcaaggaggtcacacctgttcccatgccgaacacagaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaaaa                                                                                                                                                     <  1:403801‑M1/3‑1 (MQ=255)       gtagggcacacgtgttcccatgcctaacacagaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGt                                                                                                                                                 >  2:127040‑M1/145‑151 (MQ=255)          ggtcacacctgttcccatgccgaacacagaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTAt                                                                                                                                              <  1:352029‑M1/10‑1 (MQ=255)                gTTCAGTACAGATGACAAAGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACtt                                                                                                                                        <  2:419170/151‑1 (MQ=255)                  ctgttcccatgccgaacacagaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTaa                                                                                                                                      >  2:434694‑M1/134‑151 (MQ=255)                  ctgttaccatgctgaacacagaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcacattttggttaaacaataaaatggacaagataaAAAAAGTTATTGACTTaa                                                                                                                                      <  2:432091‑M1/18‑1 (MQ=255)                    gttcccatgccgaacacagaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAAt                                                                                                                                    <  2:451493‑M1/20‑1 (MQ=255)                     gTACAGATGACAAAGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATg                                                                                                                                   >  1:213223/1‑151 (MQ=255)                        cAGATGACAAAGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTta                                                                                                                                >  2:297787/1‑151 (MQ=255)                         aGATGACAAAGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTtaa                                                                                                                               >  1:86987/1‑151 (MQ=255)                           tgccgaacacagaagttaagctccttagcgtcgatggtagtcgaaatgacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTtgata                                                                                                                             <  2:368892‑M1/27‑1 (MQ=255)                               gaacacagaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAAt                                                                                                                         <  2:24074‑M1/31‑1 (MQ=255)                               gaacacagaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGCTATTGACTTAAATGTTGATAAAAt                                                                                                                         <  2:322529‑M1/31‑1 (MQ=255)                                aaaGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATg                                                                                                                        <  1:286164/151‑1 (MQ=255)                                    gtgtAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGtata                                                                                                                    <  1:377266/151‑1 (MQ=255)                                    cagaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGtata                                                                                                                    >  1:267454‑M1/116‑151 (MQ=255)                                    cagaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGtata                                                                                                                    >  1:280378‑M1/116‑151 (MQ=255)                                    cagaagttaagctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTGATTGACTTAAATGTTGATAAAATGtata                                                                                                                    <  2:42175‑M1/36‑1 (MQ=255)                                       aagttaagctcctgagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTAtaatt                                                                                                                 >  1:48818‑M1/113‑151 (MQ=255)                                              tACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCtt                                                                                                          <  2:57572/151‑1 (MQ=255)                                              tACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCtt                                                                                                          <  2:108478/151‑1 (MQ=255)                                              tACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCtt                                                                                                          <  2:57566/151‑1 (MQ=255)                                               ctccttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTg                                                                                                         >  1:313962‑M1/105‑151 (MQ=255)                                               ctacttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTg                                                                                                         >  2:94152‑M1/105‑151 (MQ=255)                                                   ttagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCgg                                                                                                     >  2:35032‑M1/101‑151 (MQ=255)                                                    tagcgtcgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGt                                                                                                    <  2:64626‑M1/52‑1 (MQ=255)                                                         aGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGaa                                                                                               >  1:246425/1‑151 (MQ=255)                                                         aGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGaa                                                                                               >  2:454121/1‑151 (MQ=255)                                                          cgatggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaaaaaaaaaaaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGaaa                                                                                              >  2:263275‑M1/94‑151 (MQ=255)                                                             tggtagtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAAt                                                                                           <  1:25746‑M1/61‑1 (MQ=255)                                                                 agtcgaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAAc                                                                                       <  1:332517‑M1/65‑1 (MQ=255)                                                                  aaaGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACa                                                                                      >  1:107724/1‑151 (MQ=255)                                                                   aaGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACAt                                                                                     >  2:201269/1‑151 (MQ=255)                                                                     gaacttacgttccgctagagtagaacgttgccaggcagttttttattttttttttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTg                                                                                   <  2:223226‑M1/69‑1 (MQ=255)                                                                     gaacttacgttccgctagagtagaacgttgccaggcagttttttaattaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTCGATAAAATGTATAATTAATTCTTGCCGCTAAGAAAAATGAACATTg                                                                                   <  2:277686‑M1/69‑1 (MQ=255)                                                                     gaacttacgttccgctagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTg                                                                                   <  1:223265‑M1/69‑1 (MQ=255)                                                                       cTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGaa                                                                                 >  2:401087/1‑151 (MQ=255)                                                                           ataGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACt                                                                             <  1:347085/151‑1 (MQ=255)                                                                            cgttccgctagagtagaacgttgccaggcagttgtatgatttaaggattgttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTg                                                                            <  2:369111‑M1/76‑1 (MQ=255)                                                                             aGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGa                                                                           <  1:385820/151‑1 (MQ=255)                                                                                   tatttattGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGCATAATTAATTCTTAAAAAAAAAAAAAATGAACATTGAAAACTGAATGACa                                                                     <  2:398899/151‑1 (MQ=255)                                                                                   tatttGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACa                                                                     <  2:92636/151‑1 (MQ=255)                                                                                    tagagtagaacgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACaa                                                                    >  2:45583‑M1/68‑151 (MQ=255)                                                                                          tgAGGCAAACAAAACAACTCAACTTAATAAGTAACTTTAAGTACTGTCGAAAAATAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTc                                                              <  1:42487/151‑1 (MQ=255)                                                                                             acgttgccaggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAAc                                                           <  2:134740‑M1/93‑1 (MQ=255)                                                                                               caaacaaaACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGt                                                         >  1:80782/1‑151 (MQ=255)                                                                                                     aggcagttttttaatcaaattttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTc                                                   >  2:403801‑M1/51‑151 (MQ=255)                                                                                                         aactcaactTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCaaa                                               >  2:90857/1‑151 (MQ=255)                                                                                                         aactcaactTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGCTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCaaa                                               >  1:152493/1‑151 (MQ=255)                                                                                                                   tcaaatcttggttaaaaaataaaatggacaagataaAAAAAGCTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAAAAACAAAAAACGTAACt                                     >  2:442230‑M1/37‑151 (MQ=255)                                                                                                                   aaGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCAGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACt                                     <  2:415575/151‑1 (MQ=255)                                                                                                                    aGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACta                                    >  1:275587/1‑151 (MQ=255)                                                                                                                        aTAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAg                                <  1:280917/151‑1 (MQ=255)                                                                                                                        aTAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAAGTCCAAAAAACGTAACTATAAg                                <  1:23712/151‑1 (MQ=255)                                                                                                                          ttggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGtt                              <  2:444158‑M1/122‑1 (MQ=255)                                                                                                                           tggttaaaaaataaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTa                             <  2:143398‑M1/123‑1 (MQ=255)                                                                                                                              ttaaaaaataaaatggaaaagataaAAAAAGATATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAAAAAAAAAAAAAAAAAACGTAACTATAAGTTACaa                          >  2:356118‑M1/26‑151 (MQ=255)                                                                                                                                      taaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACattatt                  <  1:165210‑M1/134‑1 (MQ=255)                                                                                                                                       aaaatggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTAttt                 >  1:368892‑M1/17‑151 (MQ=255)                                                                                                                                          gAAAATTAATTTTAAAAAGTTATTGACTTAAATGTGAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTAGt              >  2:95451/1‑151 (MQ=255)                                                                                                                                          gAAAATTAATTTTAAAAAGCTACCTTGTTAATGGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTAga              >  2:95457/1‑150 (MQ=21)                                                                                                                                           tggacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTAGTa             <  2:323453‑M1/139‑1 (MQ=255)                                                                                                                                            aaaTTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTAGTAt            <  2:395614/151‑1 (MQ=255)                                                                                                                                            aaaTTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAAAAATAATAAAAAAAAACGTAACTATAAGTTACAAACATTATTTAGTAt            <  2:395615/151‑1 (MQ=37)                                                                                                                                             gacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTAGTAtt           >  2:1401‑M1/11‑151 (MQ=255)                                                                                                                                             aattaattTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTAGTAtt           <  1:334785/151‑1 (MQ=255)                                                                                                                                             aacaagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAAAATTGAAAACTGAATGACAATATGTAAAAAAAAAAAAAAAAAAACGTAACTATAAGTTACAAACATTATTTAGTAtt           >  2:109562‑M1/11‑151 (MQ=255)                                                                                                                                               caagataaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTAGTATTTa         <  2:401371‑M1/143‑1 (MQ=255)                                                                                                                                                    taaAAAAAGTTATTGACTTAAATGTTGATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTAGTATTTATGAGc    <  2:335662‑M1/148‑1 (MQ=255)                                                                                                                                                      tAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTAGTATTTATGAGCTa  <  1:137455/151‑1 (MQ=255)                                                                                                                                                       |                                                                                                                                                      TCTTAGGATAAGGGCGTTCAGTACAGATGACAAAGGTGTAATTTTTACTGTTGTTAAGCAGTTTGAAAGCCTGTATAGTATTTATTTGTTGAGGCAAACAAAACAACTCAACTTAAGAAATAACTTGAATTACTAACGAAAATTAATTTTAAAAAGTTATTGACTTAAATGTTAATAAAATGTATAATTAATTCTTGTCGGTAAGAAAAATGAACATTGAAAACTGAATGACAATATGTCAACGTTAATTCCAAAAAACGTAACTATAAGTTACAAACATTATTTAGTATTTATGAGCTA  >  CP000730/512470‑512769

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.