breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	512,643	0	A	G	50.8%	2.8 / 94.1	65	intergenic (+711/‑150)	recR/rrs1	recombination protein RecR/16S ribosomal RNA
*	CP000730	111,516	0	C	A	31.9%	128.5 / 59.1	69	Q196K (CAA→AAA)	USA300HOU_0110	possible staphylococcal tandem lipoprotein
*	CP000730	111,512	0	A	G	31.5%	99.7 / 65.8	73	S194S (TCA→TCG)	USA300HOU_0110	possible staphylococcal tandem lipoprotein

Marginal new junction evidence (sorted from low to high skew)
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 613910	67 (1.400)	5 (0.110)	4/296	5.0	6.9%	coding (2222/2844 nt)	sdrC	Ser‑Asp rich fibrinogen/bone sialoprotein‑binding protein SdrC
	?	CP000730	622287 =	69 (1.460)					coding (2850/3465 nt)	sdrE	Ser‑Asp rich fibrinogen/bone sialoprotein‑binding protein SdrE
*	?	CP000730	2085296 =	54 (1.130)	5 (0.120)	3/272	5.2	10.7%	intergenic (‑558/‑400)	mapW2/USA300HOU_1944	cell surface protein MapW2/hypothetical protein
	?	CP000730	= 2128343	35 (0.810)					intergenic (+57/+1062)	int/hlgB	bacteriophage integrase/possible leukocidin subunit