| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 2136880 | 74 (0.690) | 4 (0.040) | 4/256 | 12.4 | 5.6% | intergenic (+66/+787) | USA300HOU_2018/USA300HOU_2019 | Trk family potassium (K+) transporter, ABC protein/GNAT family acetyltransferase |
| ? | CP000730 | = 2136884 | 66 (0.670) | intergenic (+70/+783) | USA300HOU_2018/USA300HOU_2019 | Trk family potassium (K+) transporter, ABC protein/GNAT family acetyltransferase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGGACTATTAACTTTATTAAGAACATTTATACCACCAAAAAGTCCTAAAAATTACCGCTACACTAAAGGACAAATTTATCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2136730‑2136880‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaactacctGTTTAGGTAGTTTTTTTAATGTAATAGATTAAAACACTAGTTCATTTCTTATTAAAGATGGATAGTTATTTTATAGATAAATTTGTCCTTTAGTGTAGCGGTAATTTTTAGGACTTTTTGGTGGTATAAATGTTCTTAA < CP000730/2136884‑2136746 atGACTATGAACTTTATTAAGAACATTTAGACCCCCAAAAAGTCCTAAAAATTACCGCTACAGTAAAGAACAAATTTATCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAA < 2:883653/139‑1AGGACTATTAACTTTATTAAGAACATTTATACCACCAAAAAGTCCTAAAAATTACCGCTACACTAAAGGACAAATTTATCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAA > 2:499629/1‑141 GGACTATTAACTTTATTAAGAACATTTATACCACCAAAAAGTCCTAAAAATTACCGCTACACTAAAGGACAAATTTATCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAA > 2:982389/1‑141 gacattcAACTTTATGAATAACATTTATACCACCAAAAATCCCTAACAAATACCGCTACACTAAAGGACAAATTTATCTATAAAATAACTATCCATCTTTAATAAGAAATGCACTAGTGTTTTAATCTATTACATTAAAAA < 2:846091/134‑1 ACTATTAACTTTATTAAGAACATTTATACCACCAAAAAGTCCTAAAAATTACCGCTACACTAAAGGACAAATTTATCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAA > 1:774757/1‑141 TTAACTTTATTAAGAACATTTATACCACCAAAAAGTCCTAAAAATTACCGCTACACTAAAGGACAAATTTATCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTA > 2:878508/1‑141 AAAGGACAAATTTATCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTGTTTAGGTAGTTTTTTTAATGTAATAGATTAAAACACTAGTTCATTTCTTATTA > 2:26640/1‑141 TATCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTGTTTAGGTAGTTTTTTTAATGTAATAGATTAAAACACTAGTTCATTTCTTATTAAAGATGGATAGT < 2:776843/141‑1 TAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTGTTTAGGTAGTTTTTTTAATGTAATAGATTAAAACACTAGTTCATTTCTTATTAAAGATGGATAGTTATTTTATAGATAAATTTGTCCTTT < 1:26640/141‑1 AAAAAAACTACCTGTTTAGGTAGTTTTTTTAATGTAATAGATTAAAACACTAGTTCATTTCTTATTAAAGATGGATAGTTATTTTATAGATAAATTTGTCCTTTAGTGTAGCGGTAATTTTTAGGACTTTTTGGTGGTATA < 2:212221/141‑1 AAAAACTACCTGTTTAGGTAGTTTTTTTAATGTAATAGATTAAAACACTAGTTCATTTCTTATTAAAGATGGATAGTTATTTTATAGATAAATTTGTCCTTTAGTGTAGCGGTAATTTTTAGGACTTTTTGGTGTTATAAA > 2:694255/1‑141 AAAACTACCTGTTTAGGTAGTTTTTTTAATGTAATAGATTAAAACACTAGTTCATTTCTTATTAAAGATGGATAGTTATTTTATAGATAAATTTGTCCTTTAGTGTAGCGGTAATTTTTAGGACTTTTTGGTGGTATAAAT < 1:833584/141‑1 aaatgCCTGTTTATGTAGTTTTTTGAAGTTAAGCGCTTAAAACACTAGTTCATTTCTTATGTAAGATGGATAGTTATTTTATAGATAAATTTGTCCTTTAGTGTAGCGGTAATTTTTAGGACTTTTTGGTGGTATAAATGT < 2:569732/136‑1 AACTACCTGTTTAGGTAGTTTTTTTAATGTAATAGATTAAAACACTAGTTCATTTCTTATTAAAGATGGATAGTTATTTTATAGATAAATTTGTCCTTTAGTGTAGCGGTAATTTTTAGGACTTTTTGGTGGTATAAATGT < 2:689723/141‑1 AACTACCTGCTTAGGTAGTTTTTTTAATGTAAGAGATTAAAACACTAGTTCATTTCTTATTAAAGATGGATAGTTATTTTATAGATAAATTTGTCCGTTAGTGTAGCGGTAATTTTGAGGACTTTTTGGTGGTATAAATGT < 1:2021/141‑1 CTACCTGTTTAGGTAGTTTTTTTAATGTAATAGATTAAAACACTAGTTCATTTCTTATTAAAGATGGATAGTTATTTTATAGATAAATTTGTCCTTTAGTGTAGCGGTAATTTTTAGGACTTTTTGGTGGTATAAATGTTC < 2:537320/141‑1 tCTGTTTAGGTAGTTTTTTTAATGTAATAGATTAAAACACTAGTTTATTTCTTATTAAAGATGGATAGTTATTTTATAGATAAATTTCTCCTTTAGTGTAGCGGTAATTTTTAGGACTTTTTGGTGGTATAAATGTGCTTA < 2:734605/140‑1 CTGTTTAGGTAGTTTTTTTAATGTAATAGATTAAAACACTAGTTCATTTCTTATTAAAGATGGATAGTTATTTTATAGATAAATTTGTCCTTTAGTGTAGCGGTAATTTTTAGGACTTTTTGGTGGTATAAATGTTCTTAA < 2:840193/141‑1 AGGACTATTAACTTTATTAAGAACATTTATACCACCAAAAAGTCCTAAAAATTACCGCTACACTAAAGGACAAATTTATCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2136730‑2136880‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaactacctGTTTAGGTAGTTTTTTTAATGTAATAGATTAAAACACTAGTTCATTTCTTATTAAAGATGGATAGTTATTTTATAGATAAATTTGTCCTTTAGTGTAGCGGTAATTTTTAGGACTTTTTGGTGGTATAAATGTTCTTAA < CP000730/2136884‑2136746 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |