New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	52489 =	100 (0.930)	27 (0.280)	3/250	13.0	24.2%	intergenic (+99/‑574)	USA300HOU_0043/USA300HOU_0044	hypothetical membrane protein/possible transcriptional regulator
	?	CP000730	= 52983	80 (0.830)					intergenic (+593/‑80)	USA300HOU_0043/USA300HOU_0044	hypothetical membrane protein/possible transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.

ATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGA  >  CP000730/52843‑53121                                                                                                                                             |                                                                                                                                           aTCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCTCGAAAATCGCGTGAAATAGTCATAGGAAACGTTTGAGATCATCGTAGCAATCGCTCGa                                                                                                                                            >  1:137956/1‑141 (MQ=11) aTCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTAAGAGGAATCGTTTGAAAAAATCGTAGTAATCGCGCGa                                                                                                                                            >  2:200213/1‑141 (MQ=255)        gAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATcgc                                                                                                                                     <  1:1050332/141‑1 (MQ=32)               tcGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTAGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATAACGGAAAAATCGCGTGAAAt                                                                                                                              >  2:780089/1‑141 (MQ=11)                  tagtaATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGGATCGTTTGAGATAATCGTAGTAATCGCGCGAAAATCGCGTGAAATACt                                                                                                                           >  2:151845/1‑141 (MQ=255)                  tagtaATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATAAGAGGAATGGTTTGAGAAAATCGTAGTAATCGCGGGAAAATAGCGTGAAATAcg                                                                                                                           >  2:814723/1‑140 (MQ=11)                   agtaATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTa                                                                                                                          >  1:982465/1‑141 (MQ=35)                   agtaATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGAATGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTa                                                                                                                          >  1:941148/1‑141 (MQ=25)                     taATCGCGCGAAAATCGCGTGATATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGGGGAATCGTTTGAAATCATCGTAGTAATCGCACGAAAATCGCGTGAAATACTATg                                                                                                                        >  2:879371/1‑141 (MQ=255)                       aTCGCGCGAAAATCCCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGt                                                                                                                      <  2:804106/141‑1 (MQ=25)                          gcgcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGa                                                                                                                   <  1:649904/141‑1 (MQ=40)                            gcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATcgcg                                                                                                                                    <  1:925619/122‑1 (MQ=32)                            gcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACg                                                                                                                 <  1:310245/141‑1 (MQ=255)                            gcgAAAATAGCGTAAAAAAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACg                                                                                                                 <  1:704798/141‑1 (MQ=255)                                aagtCGCGGGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGttt                                                                                                             <  1:364256/138‑1 (MQ=255)                                aaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGttt                                                                                                             <  1:583767/141‑1 (MQ=255)                                 aaacgcgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTg                                                                                                            <  2:230427/138‑1 (MQ=255)                                   tCGCGTGAAATAATCAGCGGGCGCGGTTGGAGTCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGGGGGATGGTTTGAGATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAGGATGGTAGGCGGTTTGAg                                                                                                          >  2:1166815/1‑141 (MQ=14)                                     gcgTGAAATAATCAGAGGAACCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTa                                                                                                        <  2:779308/141‑1 (MQ=255)                                      cgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTaa                                                                                                       >  1:194201/1‑141 (MQ=255)                                       gTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTaaa                                                                                                      <  1:311112/141‑1 (MQ=255)                                       gTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTaaa                                                                                                      <  1:110607/141‑1 (MQ=255)                                         gAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAAtt                                                                                                    <  2:1161904/141‑1 (MQ=255)                                         gAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCAAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATAGCGCGAAAATCGAGTGAAATACTATGTTAGACGGTTTGAGTAAAtt                                                                                                    >  2:658175/1‑141 (MQ=255)                                          aaaTAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTa                                                                                                   <  1:1190517/141‑1 (MQ=255)                                          aaaTAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTa                                                                                                   <  1:940894/141‑1 (MQ=255)                                             aaaaccgcggAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAAACGCGCGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATg                                                                                                <  1:373003/133‑1 (MQ=255)                                              aatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCCGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGGAAATTAATgg                                                                                               >  2:131064/1‑141 (MQ=255)                                              aatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTAAGGTAGACGGTTTGAGTAAATTAATgg                                                                                               >  1:689144/1‑141 (MQ=255)                                              aatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATATGGTAGACGGTTTGAGTAAATTAATgg                                                                                               >  1:683508/1‑141 (MQ=255)                                                 acgatcaaTCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGt                                                                                            <  1:429281/135‑1 (MQ=255)                                                  agagGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTa                                                                                           >  1:180055/1‑141 (MQ=255)                                                  agagGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTa                                                                                           >  1:633236/1‑141 (MQ=255)                                                        aTCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTaa                                                                                     <  1:492647/141‑1 (MQ=255)                                                          cGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAata                                                                                   <  1:7221/141‑1 (MQ=255)                                                            tttGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATGtt                                                                                 >  1:160583/1‑141 (MQ=255)                                                             ttGAAATCGTCGTAGTACTCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATAttt                                                                                <  1:270283/141‑1 (MQ=255)                                                                    catcGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGttt                                                                         >  1:417614/1‑141 (MQ=255)                                                                       cGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGGTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTgga                                                                      >  1:475066/1‑141 (MQ=255)                                                                       cGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGATTGAGTAAATTAATGGAGAATGTTAATATATAGGGGTTgga                                                                      >  2:705297/1‑141 (MQ=18)                                                                           gtaATCGCCCGAAAATCGCGTGAACTAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGaa                                                                  <  2:626547/141‑1 (MQ=255)                                                                            taATCGCGCGAAAATCGCGTGAAATAATCCGAGGACTCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTTAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAAt                                                                 <  2:1193100/141‑1 (MQ=255)                                                                               tCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAAACGCGTGAAATACTATGGTAGACGGTCTGAGTAAATTAATGGAGTATTTTAATATTCATGGTTTGGAGGAATTGc                                                              >  2:32505/1‑141 (MQ=255)                                                                                cgcgcgAAAATCGCGTGAAATAATCAGCGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGAAGTATTTTAATGTTGGTGGTTTAGAGGAATTGCg                                                             >  1:889301/1‑141 (MQ=21)                                                                                cgcgcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCg                                                             <  1:1049055/141‑1 (MQ=255)                                                                                cgcgcgAAAATCGCGAGAAATAAACAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCg                                                             <  1:1166815/141‑1 (MQ=255)                                                                                 gcgcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGt                                                            <  1:496823/141‑1 (MQ=255)                                                                                    cgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGc                                                         <  1:375456/141‑1 (MQ=255)                                                                                     gAAAATCGCGTGAAATAATCAGAGGACTCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCa                                                        <  1:726365/141‑1 (MQ=255)                                                                                       aaagctcgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATa                                                      <  2:404258/135‑1 (MQ=255)                                                                                       aaaTCGCGTGAAAGAATCAGAGGAATCGTTTGAAAGCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATa                                                      <  1:929125/141‑1 (MQ=255)                                                                                         aTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATaga                                                    <  1:442732/141‑1 (MQ=255)                                                                                         aTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATaga                                                    <  2:180055/141‑1 (MQ=255)                                                                                          tCGCGTGAAATAATCAGCGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATagag                                                   <  1:543627/141‑1 (MQ=255)                                                                                          tCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAGATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTATAATATTTGTGGTTTGGAGGAATTGCCTTTCAgagaa                                                   >  2:524707/1‑140 (MQ=25)                                                                                           cgcgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAgaga                                                  >  2:814105/1‑141 (MQ=255)                                                                                            gcgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTACTGGAGTAACTGAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGaa                                                 >  2:543627/1‑141 (MQ=255)                                                                                            gcgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGaa                                                 <  1:986367/141‑1 (MQ=255)                                                                                            gcgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGaa                                                 <  1:1129056/141‑1 (MQ=255)                                                                                                  aataatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTaaa                                           <  1:424630/141‑1 (MQ=255)                                                                                                  aataatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAACGGAGTATTTTAATATTTATGGTTTGTAGGAATTCCGTTGCATAGAGAAAGTaaa                                           <  1:780089/141‑1 (MQ=255)                                                                                                     aatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGGGTTGCATAGAGAAAGTAAataa                                        >  2:830674/1‑140 (MQ=255)                                                                                                      atCATAGGAATTGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAatata                                       <  2:227011/141‑1 (MQ=255)                                                                                                         agagGAATCGTTTGATATTATTGGAGTTATCGCGTGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATag                                    <  2:941148/141‑1 (MQ=255)                                                                                                         agagGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATag                                    <  1:908939/141‑1 (MQ=255)                                                                                                           agGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATGTTTATGGTGTGGGGGACTTGGGTTGAATAGGGAAGGTAGATATATagag                                  >  1:69209/1‑141 (MQ=25)                                                                                                           agGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGCTTCGGGGGAACGCACGGCATAGAGAATGtgcgattatatat                                  >  1:271423/1‑129 (MQ=21)                                                                                                              aaTCGTTTGAAATCATCGTAGTAAACGCGCCAAAATCACGTTAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGtat                               <  1:328030/141‑1 (MQ=255)                                                                                                                 cGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATAGAGAGTATaaa                            >  2:693754/1‑140 (MQ=255)                                                                                                                    ttGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGaaa                         >  2:380906/1‑141 (MQ=255)                                                                                                                    ttGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGGATAAGaaa                         >  1:1138998/1‑141 (MQ=255)                                                                                                                    ttGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGAATTTTAATATTTATGGTTTGGGGGAATTGAGTTGCCGAGGGAAAGTAAAAGAATagaggaaaacacc                         >  2:294381/1‑132 (MQ=25)                                                                                                                    ttGAAATCATCGTACTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAATATTGTAATACTTAAGGCTTGGAGGAACTGCGTTGCAGAGAGAAAGTAAATATATAGAGTATAAGaaa                         >  2:816908/1‑141 (MQ=38)                                                                                                                     tGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAAt                        >  1:94086/1‑141 (MQ=255)                                                                                                                      gAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATc                       >  1:995544/1‑141 (MQ=255)                                                                                                                       aaaTCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCa                      <  2:633236/141‑1 (MQ=255)                                                                                                                       aaaTCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCa                      <  2:1099780/141‑1 (MQ=255)                                                                                                                            gtcGGAGTAAGCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGaaa                 <  2:529076/140‑1 (MQ=255)                                                                                                                            atcGTAGTAGTCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGaaa                 <  2:1069803/141‑1 (MQ=255)                                                                                                                            atcGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTGAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCATGaaa                 <  1:820900/141‑1 (MQ=255)                                                                                                                            atcGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATACTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGaaa                 >  1:53414/1‑141 (MQ=255)                                                                                                                             tcGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGaaaa                <  1:307638/141‑1 (MQ=255)                                                                                                                                         cgcgAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTa                                                                                                        <  2:779264/41‑1 (MQ=255)                                                                                                                                         cgcgAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTa                                                                                                        >  1:779264/1‑41 (MQ=255)                                                                                                                                           cgAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGACTAAGAAATCACGAAAAGGCTTATCTAATGa  >  2:785069/1‑141 (MQ=255)                                                                                                                                             |                                                                                                                                           ATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATGA  >  CP000730/52843‑53121

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.