Predicted mutation
evidence seq id position mutation annotation gene description
RA CP000730 1,797,772 G→C R7G (CGC→GGC)  phoR ← sensor histidine kinase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007301,797,7720GC98.8% 264.3 / NA 81R7G (CGC→GGC) phoRsensor histidine kinase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base C (36/44);  minor base T (1/0);  total (37/44)
Fisher's exact test for biased strand distribution p-value = 4.57e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

TAAATATATGATCTTGCATCTGTTGCTAGAGCTTGTTCGTGTTTTTCTGATAAAACATATGTGATGGAAGCGTGAATAATAATGCCTAATGTAACAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCGGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTAAGCCACGCACAGTTTTAATAAGTTGTGGCTTCTTAGGATTATCTTCTAATTTATCTCTTAAATGACTGATATGTACATCAACAATTCT  >  CP000730/1797636‑1797909
                                                                                                                                        |                                                                                                                                         
taaataTATGATCTTGCATCTGTTGCTAGAGCTTGTTCGTGTTTTTCTGATAAAACATATGTGATGGAAGCGTGAATAATAATGCCTAATGTAACAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCcgtgg                                                                                                                                       <  1:551399/141‑1 (MQ=255)
 aaataTATGATCTTGCATCTGTTGCTAGAGCTTGTTCGTGTTTTTCTGATAAAACATATGTGATGGAAGCGTGAATAATAATGCCTAATGTAACAAAACTGATAATTAATATACTGCTTATCGATAACATTAAGCcgtggg                                                                                                                                      >  1:862328/1‑140 (MQ=255)
  aataTATGATCTTGCATCTGTTGCTAGAGCTTGTTCGTGTTTTTCTGATAAAACATATGTGATGGAAGCGTGAATAATAATGCCTAATGTAACAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCCgtggtg                                                                                                                                     <  1:649508/141‑1 (MQ=255)
      tatGATCTTGCATCTGTTGCTAGAGCTTGTTCGTGTTTTTCTGATAAAACATATGTGATGGAAGCGTGAATAATAATGCCTAATGTAACAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCCGTGGTGAAAc                                                                                                                                 <  1:1040523/141‑1 (MQ=255)
         gATCTTGCATCTGTTGCTAGAGCTTGTTCGTGTTTTTCTGATAAAACATATGTGATGGAAGCGTGAATAATAATGCCTAATGTAACAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCCGTGGTGAAACTtc                                                                                                                              <  1:412733/141‑1 (MQ=255)
          ttCTTGCATCTGTTGCTAGAGCTTGTCCGTGTTTTTCTGATAAAACATATGTGATGGAAGCGTGAATAATAATGCCTAATGTAACAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCCGTGGTGAAACTtca                                                                                                                             <  2:1028685/140‑1 (MQ=255)
              tGCATCTGTTGCTAGAGCTTGTTCGTGTTTTTCTGATAAAACATATGTGATGGAAGCGTGAATAATAATGCCTAATGTAACAAAACTGATAATTAATATACTGCTTATAAATAACATTAAGCCGTGGTGAAACTTcataat                                                                                                                         >  2:594823/1‑141 (MQ=255)
                 aTCTGTTGCTAGAGCTTGTTCGTGTTTTTCTGATAAAACATATGTGATGGAAGCGTGAATAATAATGCCTAATGTAACAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGt                                                                                                                      >  1:42481/1‑141 (MQ=255)
                  tCTGTTGCTAGAGCTTGTTCGTGTTTTTTTTTTTTTTTTTATGTGATGGAAGCGTGAATAATAATGCCTAATGTAACGAAACTGATAATTAATCTATTGCTTATCAATAATATTAATCCGTGGTGAAACTTCATCCTtttt                                                                                                                     >  2:410507/1‑141 (MQ=255)
                  tCTGTTGCTAGAGCTTGTTCGTGTTTTTCTGATAAAACATATGTGATGGAAGCGTGAATAATAATGCCTAATGTAACAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGtt                                                                                                                     >  1:1036337/1‑141 (MQ=255)
                  tCTGGTGCTAGAGCTTGTTCGTGTTTTTCTGATAAAACATATGTGATGGAAGCGTGAATAATAATGCCTAATGTAACAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGtt                                                                                                                     <  1:432166/141‑1 (MQ=255)
                     gTTGCTAGAGCTTGTTCGTGTTTTTCTGATAAAACATATGTGATGGAAGCGTGAATAATAATGCCTAATGTAACAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCtt                                                                                                                  <  1:684445/141‑1 (MQ=255)
                      ttGCTAGAGCTTGTTCGTGTTTTTCTGATAAAACATATGTGATGGAAGCGTGAATAATAATGCCTAATGTAACAAAACTGATAATTAATATACTGTTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTAttt                                                                                                                 >  2:909073/1‑141 (MQ=255)
                      ttGCTAGAGCTTGTTCGTGTTTTTCTGATAAAACATATGTGATGGAAGCGTGAATAATAATGCCTAATGTAACAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCttt                                                                                                                 <  2:764685/141‑1 (MQ=255)
                        tcTAGAGCTTGTTCGTGTTTTTCTGATAAAACATATGTGATGGAAGCGTGAATAATAATGCCTAATGTAACAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAg                                                                                                               <  2:999900/140‑1 (MQ=255)
                        gCTAGAGCTTGTTCGTGTTTTTTTTTTTTATTTTATGTGATGGAAGCGTGAATAATAATGCCTAATGTAAGAAAACTGATAATGAATATACCGCTTATCAATAACATTAAGCCGTGGTGAAACTTCGTCTTTGTTGTTTat                                                                                                               >  2:610560/1‑140 (MQ=255)
                            gagCTTGTTCGTGTTTTTCTGATAAAACATATGTGATGGAAGCGTGAATAATAATGCCTAATGTAACAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCt                                                                                                           <  2:42481/141‑1 (MQ=255)
                            gagCTTGTTAGTGTTTTTCTGATAAAACATATGTGATGGAAGCGTGAATAATAATGCCTAATGTAACAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCCGCGGTTAAACGGCATCATTGTTCTTTAGGTCt                                                                                                           <  1:1198579/141‑1 (MQ=255)
                                ttGTTCGTGTTTTTCTGATAAAACATATGTGATGGAAGCGTGAATACTCCTACTTAATGGAACAAAACTGATAATTAATATACTGCTTAACAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTcc                                                                                                       <  1:935008/141‑1 (MQ=255)
                                  gTTCGTGTTTTTCTGATAAAACATATGTGATGGAATCGTGAATAATAATGCCTAATTTAACAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCaa                                                                                                     <  1:1195212/141‑1 (MQ=255)
                                  gTTCGTGTTTTTCTGATAAAACATATGTGATGGAAGCGTGAATAATAATGCCTAATGTAACAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCaa                                                                                                     >  1:970503/1‑141 (MQ=255)
                                  gTTCGTGTTTTTCTGATAAAACATATGTGATGGAAGCGTGAATAATAATGCCTAATGTAACAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCCGTGGTGAAACTTCATAATTGTTCTTTAAGTCTTTCCaa                                                                                                     >  1:510953/1‑141 (MQ=255)
                                    tCGTGTTTTTCTGATAAAACATATGTGATGGAAGCGTGAATAATAATGCCTAATGTAACAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCCGTGGTGAAGCTTCATCATTGTTCTTTAGGTCTTTCCAAtt                                                                                                   >  1:247244/1‑141 (MQ=255)
                                           tttCTGATAAAACATATGTGATGGAAGCGTGAATAATAATGCCTAATGTAACAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGcc                                                                                            <  1:878847/141‑1 (MQ=255)
                                              cTGATAAAACATATGTGATGGAAGCGTGAATAATAATGCCTAATGTAACAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTaa                                                                                         <  1:712137/141‑1 (MQ=255)
                                                gATAAAACATATGTGATGGAAGCGTGAATAATAATGCCTAATGTAACAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTAAGc                                                                                       <  2:651654/141‑1 (MQ=255)
                                                    aaaCATATGTGATGGAAGCGTGAATAATAATGCCTAATGTAACAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTAAGCCACg                                                                                   >  1:781441/1‑141 (MQ=255)
                                                      aCAAATGAGATGGAAGCGGGAAAAATAAAGGCTAATGTAACAAAACTGATAATTAATATACTGCCTATCAACAACATTAAGCCGTGGTGAAACCTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTAAGCCACGca                                                                                 <  1:36918/141‑1 (MQ=255)
                                                          atGTGATGGAGGCGTGAATAATAATGCCTAATGTAAGAAAACTGATAATTAATATACTGCTTCTCAATAACATTAAGCTGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCACTTTATAGCATAAGCCagccaaagt                                                                             >  2:971578/1‑133 (MQ=255)
                                                                tGGAAGCGTGAATAATAATGCCTAATGTAACAAAACTGATAATTCATATACTGCTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTAAGCCACGCACAGTTTtaat                                                                       <  1:858191/141‑1 (MQ=255)
                                                                tGGAAGCGTGAATAATAATGCCTAATGTAACAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTAAGCCACGCACAGTTTtaat                                                                       <  1:956168/141‑1 (MQ=255)
                                                                 ggAAGCGTGAATAATGATGCCTAATGTAACAAAAATGATAATTAATATACTGCTTAGCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTAAGCCACGCAGAGTTTtaata                                                                      >  2:617476/1‑141 (MQ=255)
                                                                    aGCGTGAATAATAATGCCTAATGTAACAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTAAGCCACGCACAGTTTTAATAAGt                                                                   >  1:309241/1‑141 (MQ=255)
                                                                     gcctGAATAATAATGCCTAATGTAACAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTAAGCCACGCACAGTTTTAATAAGtt                                                                  <  1:1107673/138‑1 (MQ=255)
                                                                     gCGTGAATAATAATGCCTAATGTAACAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCCTTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTAAGCCACGCACAGTTTTAATAAGtt                                                                  <  1:878134/141‑1 (MQ=255)
                                                                     gCGTGAACAATAATGCCTAATGTAACAAAACTGATAATTAATATACGGATTATCAATAACAATAGGCCGAGGGGCGAATACAACAGTGTATATCAGGTCGTTACAATTCATATCCTACAACACGCCCAGTTTTATTAAGtt                                                                  >  2:95163/1‑141 (MQ=255)
                                                                      cGTGAATAATAATGCCTAATGTAACAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTAAGCCACGCACAGTTTTAATAAGTtg                                                                 >  1:673548/1‑141 (MQ=255)
                                                                      cGTGAATAATAATGCCTAATGTAACAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTAAGCCACGCACAGTTTTAATAAGTtg                                                                 >  2:367223/1‑141 (MQ=255)
                                                                      cGTGAATAATAATGCCTAATGTAACAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATGTATAGCCTAAGCCACGCACAGTTTTAATAAGTtg                                                                 >  2:1026964/1‑141 (MQ=255)
                                                                          aataataatGCCTAATGTAACAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTAAGCCACGCACAGTTTTAATAAGTTGTGGc                                                             <  1:385052/141‑1 (MQ=255)
                                                                              ataatGCCTTATGTAACAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTAATAGCCTAAGCCACGCACAGTTTTAATAAGTTGTGGcttct                                                         <  1:825044/141‑1 (MQ=255)
                                                                               taatGCCTAATGTAACAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTAAGCCACGCACAGTTTTAATAAGTTGTGGcttctt                                                        <  1:646311/141‑1 (MQ=255)
                                                                                aatGCCTAATGTAACAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTAGAGCCTAAGCCACGAACAGTTTTAATAAGTTGTGGCTTCTTa                                                       >  2:486719/1‑141 (MQ=255)
                                                                                 atGCCTAATGTAACAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTAAGCCACGCACAGTTTTAATAAGTTGTGGCTTCTTAg                                                      >  2:1056177/1‑141 (MQ=255)
                                                                                 atGCCTAATGTAACAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTAAGCCACGCACAGTTTTAATAAGTTGTGGCTTCTTAg                                                      >  2:1178250/1‑141 (MQ=255)
                                                                                  tGCCTAATGTAACAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTAAGCCACGCACAGTTTTAATAAGTTGTGGCTTCTTAgg                                                     <  2:386872/141‑1 (MQ=255)
                                                                                  ctccTAATGTAACAAAACTGACAATTAACATACTTCTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTAAGCCACGCACAGTTTTAATAAGTTGTGGCTTCTTAgg                                                     <  1:250511/139‑1 (MQ=255)
                                                                                   tccTAATGTAACAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTAAGCCACGCACAGTTTTAATAAGTTGTGGCTTCTTAGGa                                                    <  2:713038/140‑1 (MQ=255)
                                                                                   gCCTAATGTAACAAAACTGATAATTAATATCCTGCTTATCAATAACATTAAGACGTGGTGAAACTTCAACATTTTTCTTTTGGTCTTTCCGATGTCGAGCCTAAGCCACGCACAGTTTTACTACGTTGTGGTTTCTTAgca                                                    <  2:528018/141‑3 (MQ=255)
                                                                                      tAATGTAACAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTAAGCCACGCACAGTTTTAATAAGTTGTGGCTTCTTAGGATTa                                                 >  1:1166200/1‑141 (MQ=255)
                                                                                      tAATGTAAAAAAACTGATAATTATTATACTGCTTATCAATAACATTAAGCCGTGGTGAAACTTCAGTATTGTTCTTTTGGTCATTTCAATTTGAATCCTGAGCCTCTCACAGTTTTAATAAGTTGTGTCTTCGTTGGATTa                                                 <  2:378028/141‑1 (MQ=255)
                                                                                       aaTGTAACAAAACTGATAATTAATATACTGCTTATCAATATCATGAAGCCGTGGTGAAACTTCTTCATTGTTCTGTAGGTATTTACAATTTGTCGCCTAAGTCACGTACAGTTTTAATAAGTTGTGGCTTCTTAGGATTAt                                                <  2:1052466/141‑1 (MQ=255)
                                                                                       aaTGTAACAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTAAGCCACGCACAGTTTTAATAAGTTGTGGCTTCTTAGGATTAt                                                <  1:580121/141‑1 (MQ=255)
                                                                                         tGTAACAAACCTGATAACTAACACCCCGGTTATCATGACCATTAATCCGTGGTGAAACTTCATCATTGTTCTTAATATCTTTCCAATTTATAGCATAAGCCTCGCACAGTTTTAATAAGCTCTCGCTTCTTAGGATTAtac                                              <  2:499230/141‑3 (MQ=255)
                                                                                         tGTAACAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTAAGCCACGCACAGTTTTAATAAGTTGTGGCTTCTTAGGATTAtct                                              <  1:410507/141‑1 (MQ=255)
                                                                                            aaCAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTAAGCCACGCACAGTTTTAATAAGTTGTGGCTTCTTAGGATTAtcttct                                           >  1:1009351/1‑141 (MQ=255)
                                                                                            aaCAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTAAGCCACGCACAGTTTTAATAAGTTGTGGCTTCTTAGGATTAtcttct                                           <  1:210238/141‑1 (MQ=255)
                                                                                            aaCAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTAAGCCACGCACAGTTTTAATAAGTTGTGGCTTCTTAGGATTAtcttct                                           <  1:130393/141‑1 (MQ=255)
                                                                                               aaaaCTGATAATTAATATACTGCTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTAAGCCACGCACAGTTTTAATAAGTTGTGGCTTCTTAGGATTATCTTCTAAt                                        <  2:904809/141‑1 (MQ=255)
                                                                                                   cTGATAATTAATATACTGGTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTCTAGGTCTTTCCAATTTATAGCCTAAGCAACGCACAGTTTTAATAAATTGTGGCTTCTTAGGATTATCTTCTAATTTAt                                    >  2:695381/1‑141 (MQ=255)
                                                                                                      aTAATTAATATACTGCTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTAAGCCACGCACAGTTTTAATAAGTTGTGGCTTCTTAGGATTATCTTCTAATTTAtctc                                 <  1:631450/141‑1 (MQ=255)
                                                                                                        aattaatATACTGCTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTACGCCACGCACAGTTTTAATAAGTTTTGGCTTCTTAGGATTATCTTCTATTTTCTCTCtt                               >  2:145261/1‑141 (MQ=255)
                                                                                                          ttaatATACTGCTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTAAGCCACGCACAGTTTTAATAAGTTGTGGCTTCTTAGGATTATCTTCTAATTTATCTCTTaa                             <  1:950616/141‑1 (MQ=255)
                                                                                                                   tGCTTATCAATAACATTAAGCCGTGGTGAAACCTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTAAGCCACGCACAGTTTTTATAAGTTGTGGCTTCTTAGGATTATCTTCTAATTTATCTCTTAAATGACTGat                    <  1:805598/141‑1 (MQ=255)
                                                                                                                    tcTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTACAATTTATAGCCTAAGCCACGCACAGTTTTAATAAGTTGTGGCTTCTTAGGATTATCTTCTAATTTATCTCTTAAATGACTGata                   <  2:834340/140‑1 (MQ=255)
                                                                                                                    gCTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTAAGCCACGCACAGTTTTAATAAGTTGTGGCTTCTTAGGATTATCTTCTAATTTATCTCTTAAATGACTGata                   <  2:565822/141‑1 (MQ=255)
                                                                                                                     tttATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTAAGCCACGCACAGTTTTAATAAGTTGTGGCTTCTTAGGATTATCTTCTAATTTATCTCTTAAATGACTGatat                  <  2:398922/140‑1 (MQ=255)
                                                                                                                     cTTATCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTAAGCCACGCACAGTTTTAATAAGTTGTGGCTTCTTAGGATTATCTTCTAATTTATCTCTTAAATGACTGatat                  <  2:747753/141‑1 (MQ=255)
                                                                                                                     cTTAACAATAACATTAAGCCGTGGTGAAACTCCATCGTTATTCCTTTTGTCTTTACAATTTATAGCCTAAGCCACGCACAGTTTTAATAAGTTGTGGCTTCTTAGGATTATCTTCTAATTTATCTCTTAACTGACCGatat                  <  2:543225/141‑1 (MQ=255)
                                                                                                                        aTCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTCAGCCACGCACAGTTTTAATACGTTGTGGCTTCTTAGGATTATCTTCTAATTTATCTCTTAACTGACTGatctctc               >  2:566461/1‑136 (MQ=255)
                                                                                                                        aTCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTAAGCCACGCACAGTTTTAATAAGTTGTGGCTTCTTAGGATTATCTTCTAATTTATCTCTTAAATGACTGATATGTa               >  2:437888/1‑141 (MQ=255)
                                                                                                                         tCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATCGCCTAAGAAACGCACAGTTTTAATAAGTTGTGGCTTCTTAGGCTTACGTTCTAATTTATTTCTTAAATGACTGTTATGTAc              >  2:829104/1‑141 (MQ=255)
                                                                                                                         tCAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTAAGCCACGCACAGTTTTAATAAGTTGTGGCTTCTTAGGATTATCTTCTAATTTATCTCTTAAATGACTGATATGTAc              >  2:883651/1‑141 (MQ=255)
                                                                                                                          gaaTAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTGCAATTTATAGCCTAAGCCAAGCACAGTTTTAATAAGTTGTGGCTTCTTAGGATTATATTCTAATTTATATCTTAAATGACTGATATGTCCa             >  2:668948/2‑141 (MQ=255)
                                                                                                                          cAATAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTAAGCCACGCACAGTTTTAATAAGTTGTGGCTTCTTAGGATTATCTTCTAATTTATCTCATAAATGACTGAGATGTaaa             >  1:349323/1‑139 (MQ=255)
                                                                                                                           aaTAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTAAGCCACGCACAGTTTTAATAAGTTGTGGCTTCTTAGGATTATCTTCTAATTTATCTCTTAAATGACTGATATGTACAt            >  1:901359/1‑141 (MQ=255)
                                                                                                                            aTAACATTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTAAGCCACGCACAGTTTTAATAAGTTGTGGCTTCTTAGGATTATCTTCTAATTTATCTCTTAAATGACTGATATGTACATc           >  2:450346/1‑141 (MQ=255)
                                                                                                                                 aTTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTAAGCCACGCACAGTTTTAATAAGTTGTGGCTTCTTAGGATTATCTTCTAATTTATCTCTTAAATGACTGATATGTACATcaccaa      >  2:271850/1‑141 (MQ=255)
                                                                                                                                 aTTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTAAGCCACGCACAGTTTTAATAAGTTGTGGCTTCTTAGGATTATCTTCTAATTTATCTCTTAAATGACTGATATGTACATcaacaa      >  2:1054217/1‑141 (MQ=255)
                                                                                                                                 aTTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTAAGCCACGCACAGTTTTAATAAGTTGTGGCTTCTTAGGATTATCTTCTAATTTATCTCTTAAATGACTGATATGTACATcaacaa      >  1:166905/1‑141 (MQ=255)
                                                                                                                                 aTTAAGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTAAGCCACGCACAGTTTTAATAAGTTGTGGCTTCTTAGGATTATCTTCTAATTTATCGCTTAAATGACTGATATGTACATcaacaa      >  1:838035/1‑141 (MQ=255)
                                                                                                                                     aGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTTTCTCCAATTTATAGCCTAAGCCACGCACAGTTTTAATAAGTTGTGGCTTCTTAGGATTATCTTCTAATTTATCTCTTAAATGACTGATATGTACATCAACAATTCt  <  2:656564/141‑1 (MQ=255)
                                                                                                                                     aGCCGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTAAGCCACGCACAGTTTTAATAAGTTGTGGCTTCTTAGGATTATCTTCTAATTTATCTCTTAAATGACTGATATGTACATCAACAATTCt  >  2:375574/1‑141 (MQ=255)
                                                                                                                                        |                                                                                                                                         
TAAATATATGATCTTGCATCTGTTGCTAGAGCTTGTTCGTGTTTTTCTGATAAAACATATGTGATGGAAGCGTGAATAATAATGCCTAATGTAACAAAACTGATAATTAATATACTGCTTATCAATAACATTAAGCGGTGGTGAAACTTCATCATTGTTCTTTAGGTCTTTCCAATTTATAGCCTAAGCCACGCACAGTTTTAATAAGTTGTGGCTTCTTAGGATTATCTTCTAATTTATCTCTTAAATGACTGATATGTACATCAACAATTCT  >  CP000730/1797636‑1797909

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: