Predicted mutation
evidence seq id position mutation freq annotation gene description
JC CP000730 1,909,272 Δ48 bp 28.0% coding (79‑126/303 nt) USA300HOU_1771 → hypothetical membrane protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 190927118 (0.580)7 (0.230) 7/258 NT 28.0% coding (78/303 nt) USA300HOU_1771 hypothetical membrane protein
?CP000730 1909320 = 18 (0.580)coding (127/303 nt) USA300HOU_1771 hypothetical membrane protein

GTAAATGATAATCATCCAGGAGGTCTAGCATGTCTCGTTCAAAAAAATACTTTTACTTATCTAGCTTAATGATTATTTTAAGCTTTTTCTTTAATACAAATAACGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/1909165‑1909271
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTGTTATTAACTCAATTGTACTAATTTTGTCTATAATTTTTGCAGATCGTTCAATTAAATCACTAAAGCCTGATGCAGATTGGATTAGAATTGCGAGTAAAAGTTTGCCTTGGATTATTCTAATTGTTAT  >  CP000730/1909320‑1909450
                                                                                                                                                                                                                                              
GTAAATGATAATCATCCAGGAGGTCTAGCATGTCTCGTTCAAAAAAATACTATAACCTATCTAGCTTAATGATTATTTTAAGCTGTTTCTTNAATAGAAATAACATTAGTGGTATTAACGCNATTGTACTAATGTTGGCT                                                                                                    >  1:296748/1‑140
        TAATCATCCAGGAGGTCTAGCATGTCTCGTTCAAAAAAATACTTTTACTTATCTAGCTTAATGATTATTTTAAGCTTTTTCTTTAATACAAATAACGTTAGTGTTATTAACTCAATTGTACTAATTTTGTCTATAATTTT                                                                                            <  1:287122/140‑1
                    AGGTCTAGCATGTCTCGTTCAAAAAAATACTTTTACTTATCTAGCTTAATGATTATTTTAAGCTTTTTCTTTAATACAAATAACGTTAGTGTTATTAACTCAATTGTACTAATTTTGTCTATAATTTTTGCAGATCGTTC                                                                                >  1:221500/1‑140
                      cTCTAGCATGTCTCGTTCAAAAAAATACTTTTACTTATCTAGCTTAATGATTATTTTAAGCTTTTTCTTTAATACAAATAACGTTAGTGTTATTAACTCAATTGTACTAATTTTGTCTATAATTTTTGCAGATCGTTCAA                                                                              <  1:256440/139‑1
                                             AATACTTTTACTTATCTAGCTTAATGATTATTTTAAGCTTTTTCTTTAATACAAATAACGTTAGTGTTATTAACTCAATTGTACTAATTTTGTCTATAATTTTTGCAGATCGTTCAATTAAATCACTAAAGCCTGATGCA                                                       <  2:116939/140‑1
                                                           TCTAGCTTAATGATTATTTTAAGCTTTTTCTTTAATACAAATAACGTTAGTGTTATTAACTCAATTGTACTAATTTTGTCTATAATTTTTGCAGATCGTTCAATTAAATCACTAAAGCCTGATGCAGATTGGATTAGAAT                                         >  2:200163/1‑140
                                                                                                  AATAACGTTAGTGTTATTAACTCAATTGTACTAATTTTGTCTATAATTTTTGCAGATCGTTCAATTAAATCACTAAAGCCTGATGCAGATTGGATTAGAACTGCGAGTAAAAGTTTGCCTAAGATTATTCTTATTGTTAT  >  1:99741/1‑140
                                                                                                                                                                                                                                              
GTAAATGATAATCATCCAGGAGGTCTAGCATGTCTCGTTCAAAAAAATACTTTTACTTATCTAGCTTAATGATTATTTTAAGCTTTTTCTTTAATACAAATAACGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/1909165‑1909271
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTGTTATTAACTCAATTGTACTAATTTTGTCTATAATTTTTGCAGATCGTTCAATTAAATCACTAAAGCCTGATGCAGATTGGATTAGAATTGCGAGTAAAAGTTTGCCTTGGATTATTCTAATTGTTAT  >  CP000730/1909320‑1909450

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.