Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
JC	CP000730	2,014,512	+TAAAG	26.4%	coding (686/837 nt)	USA300HOU_1865 ←	teichoic acid ABC superfamily ATP binding cassette transporter, membrane protein

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2014512	14 (0.490)	5 (0.170) +TAAAG	5/230	NT	26.4%	coding (686/837 nt)	USA300HOU_1865	teichoic acid ABC superfamily ATP binding cassette transporter, membrane protein
	?	CP000730	2014513 =	14 (0.450)					coding (685/837 nt)	USA300HOU_1865	teichoic acid ABC superfamily ATP binding cassette transporter, membrane protein

CTGTACTATCATTTGAAACATCCTGTTGATTATCAGTTTGTGTCACTTTAGATGTTTTATTATAAATTGCGTGTGTCGTATACCTTGCTAATACGAAATTTACTGCAGCTATTAAACATAAGAATAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2014384‑2014512 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAAAGTAAAAATGATATGGAATGTTTTCCATACTTGATATACCAAATATGATAGATTGTGCTATACCATTAACAATGTAATACATTGGATTTAGCATTAGGATGTGATTGATAA  >  CP000730/2014513‑2014626                                                                                                                                  |||||                                                                                                                   CTGTACTATCATTTGAAACATCCTGTTGATTATCAGTTTGTGTCACTTTAGATGTTTTATTATAAATTGCGTGTGTCGTATACCTTGCTAATACGAAATTTACTGCAGCTATTAAACATAAGAATAAAATAAAGTAAAGT                                                                                                              <  2:52160/140‑1                    ATCCTGTTGATTATCAGTTTGTGTCACTTTAGATGTTTTATTATAAATCAAATCAGACGTGAACCGTGCTAATACGAACTTAACCGCAGCTATTAAACATAAGAATAAAATAAAGTAAAGTAAAAATGATATGGAATGTT                                                                                           >  2:342512/1‑140                                                                       GTGTGTCGTATACCTTGCTAATACGAAATTTACTGCAGCTATTAAACATAAGAATAAAATAAAGTAAAGTAAAAATGATATGGAATGTTTTCCATACTTGATATACCAAATATGAAAGATGTTGCTATACCATTAACAAT                                        >  2:74449/1‑140                                                                                              CGAAATTTACTGCAGCTATTAAACATAAGAATAAAATAAAGTAAAGTAAAAATGATATGGAATGTTTTCCATACTTGATATACCAAATATGATAGATTGTGCTATACCATTAACAATGTAATACATTGGATTTAGCATTA                 >  2:152286/1‑140                                                                                                             CTATTAAACATAAGAATAAAATAAAGTAAAGTAAAAATGATATGGAATGTTTTCCATACTTGATATACCAAATATGATAGATTGTGCTATACCATTAACAATGTAATACATTGGATTTAGCATTAGGATGTGATTGATAA  <  1:342512/140‑1                                                                                                                                  |||||                                                                                                                   CTGTACTATCATTTGAAACATCCTGTTGATTATCAGTTTGTGTCACTTTAGATGTTTTATTATAAATTGCGTGTGTCGTATACCTTGCTAATACGAAATTTACTGCAGCTATTAAACATAAGAATAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2014384‑2014512 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAAAGTAAAAATGATATGGAATGTTTTCCATACTTGATATACCAAATATGATAGATTGTGCTATACCATTAACAATGTAATACATTGGATTTAGCATTAGGATGTGATTGATAA  >  CP000730/2014513‑2014626

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.