Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 1,513,930 A→T 100% L413F (TTA→TTT)  USA300HOU_1379 → hypothetical membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007301,513,9300AT100.0% 84.0 / NA 27L413F (TTA→TTT) USA300HOU_1379hypothetical membrane protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base T (13/14);  total (13/14)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

TGTATCGCTTTATTAGTAGCCATTGGCATGGGGTTTGTCTCTTGGATAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTAATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTATATATTAAAGATCGTCGTGCTAAACAATAATGCACTTAAAGTTTTGAACTGACGAAATT  >  CP000730/1513805‑1514061
                                                                                                                             |                                                                                                                                   
tgtatCGCTTTATTAGTATCCATTGGCATGGGCTTTGTCTCTTGGATAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGatt                                                                                                                       <  2:77812/140‑1 (MQ=255)
   atCGCTTTATAAGTACCAATTGGCATCCGTTTTGTCTCCTGGATAAAGCGTACAAAAAATACTGCAATAAAAGTACAAAAAAAAAAAAAAAAATCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGattatt                                                                                                                    <  2:227644/140‑1 (MQ=255)
         ttaataGTAGCCATTGGCATGGGGTTTGTCTCTTGGAAAAAAAGAAAAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGcc                                                                                                              <  2:255135/140‑1 (MQ=255)
                 agCCATTGGCATGGGGTTTGTCTCTTGGATAAAGCGTACAAAAAATACTGCACTAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTg                                                                                                      >  1:9517/1‑140 (MQ=255)
                     atttgaaTGGGGTTTGTCTCTTGGATAAAGCGTACAAAAAATACTGCAATAAAAGTACCAAATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGAtt                                                                                                  <  2:22221/134‑1 (MQ=255)
                       tGGCATGGGGTTTGTCTCTTGGATAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTAt                                                                                                >  1:66638/1‑140 (MQ=255)
                         gCATGGGGTTTGTCTCTTGGATAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCa                                                                                              >  2:15353/1‑140 (MQ=255)
                                      ctctTGGATAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGTATTATCACTTATACTTatat                                                                                 >  2:339864/1‑140 (MQ=255)
                                       tctTGGATAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTACTTGGATTATCACATATCCTTGTAtt                                                                                >  2:40679/1‑140 (MQ=255)
                                          ttgaaaaagtttACAAAAAATACTGCAATAAAAGTACCACATCGCCTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTtat                                                                             <  2:101992/129‑1 (MQ=255)
                                                  gCGTACCAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTTTATCACTCATAATATGTTTTATTGTATTAGGAGTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAAt                                                                     <  1:86526/140‑1 (MQ=255)
                                                  gCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTGTAATTGAAt                                                                     >  1:108747/1‑140 (MQ=255)
                                                      aCAAAAAATACTGCTATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAat                                                                 <  1:199622/140‑1 (MQ=255)
                                                          aaaaTACTGCAATAAAAGTACCACATTGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATCATTAATGCCATTATTTGGATTATCACTTATCCTTGTACTTATAATTGAATTAAtatta                                                             <  1:217577/140‑1 (MQ=255)
                                                           aaaTACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAAtattat                                                            >  2:63321/1‑140 (MQ=255)
                                                              tACTGCAATAAAAGTACCACATCGCGTAAAAAATCCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGTATTAATATtatata                                                         <  2:235322/140‑1 (MQ=255)
                                                                  gCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTAGTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTATATATTaa                                                     >  2:194988/1‑140 (MQ=255)
                                                                     ataataGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTATATATTAAAGa                                                  <  2:259508/140‑1 (MQ=255)
                                                                            tACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTATATATTAAAGATcgtcgt                                           >  2:181713/1‑140 (MQ=255)
                                                                                    cgcgTAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTATATATTAAAGATCGTCGTGCTAAACa                                   >  2:58085/1‑140 (MQ=255)
                                                                                        tAAAAAAACCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTATATATTAAAGATCGTCGTGCTAAACaataa                               >  1:61307/1‑140 (MQ=255)
                                                                                              aaCCAGCATCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTATATATTAAAGATCGTCGTGCTAAACCATAATGCACt                         <  1:258153/140‑1 (MQ=255)
                                                                                                      tCTATATCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTATATATTAAAGATCGTCGTGCTAAACAATAATGCACTTAAAGttt                 <  2:219462/140‑1 (MQ=255)
                                                                                                          tatCACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTATATATTAAAGATCGTCGTGCTAAACAATAATGCACTTAAAGTTTTGaa             <  1:58085/140‑1 (MQ=255)
                                                                                                             cACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTATATATTAAAGATCGTCGTGCTAAACAATAATGCACTTAAAGTTTTGAACTg          >  1:61044/1‑140 (MQ=255)
                                                                                                             cACTCATAATATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTATATATTAAAGATCGTCGTGCTAAACAATAATGCACTTAAAGTTTTGAACTg          >  1:68941/1‑140 (MQ=255)
                                                                                                                 cATATTATGTTTTATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTATATATTAAAGATCGTCGTGCTAAACAATAATGCACTTAAAGTTTTGAACTGACGa      <  2:211823/140‑1 (MQ=255)
                                                                                                                     atcgtttttATTGTGTTTGGATTATTAATGCCATTATTTGGGTTATGCATTATCCTTGTATTTATAATTTAATTAATATTATATATTAAAGATCGTCGTGCTAAACAATACTGCACTTAAAGTTTTGACCTGACTaatgt  <  2:130315/135‑4 (MQ=255)
                                                                                                                             |                                                                                                                                   
TGTATCGCTTTATTAGTAGCCATTGGCATGGGGTTTGTCTCTTGGATAAAGCGTACAAAAAATACTGCAATAAAAGTACCACATCGCGTAAAAAAACCAGCATCTATATCACTCATAATATGTTTAATTGTATTAGGATTATTAATGCCATTATTTGGATTATCACTTATCCTTGTATTTATAATTGAATTAATATTATATATTAAAGATCGTCGTGCTAAACAATAATGCACTTAAAGTTTTGAACTGACGAAATT  >  CP000730/1513805‑1514061

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑