New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1623544	69 (0.850)	7 (0.090)	5/254	12.4	9.8%	intergenic (+29/+54)	graE/malA	AraC family transcriptional regulator/alpha‑glucosidase
	?	CP000730	= 1623575	66 (0.890)					intergenic (+60/+23)	graE/malA	AraC family transcriptional regulator/alpha‑glucosidase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCCATATGAACGAAATGATTTATATGTTGAAGTGTACCCTCTCGATATTTCATTTAATGACCCATTCACTAAAATTCAGCTTTGGATTCCTGTTAAACAGAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTAATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/1623395‑1623544 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccccctaataGAATCTAAGGCCATTTGTAGACCTATAGATATATTAGGGGGCTTCTTTGTTTTTTATTATTTAATCTTCGTCATAAGGACTCTGTTTAACAGGAATCCAAAGCTGAATTTTAGTGAATGGGTCATTAAATGA  <  CP000730/1623575‑1623444                                                                                                                                                                                                                                                                                            GCCATATGAACGAAATGATTTATATGTTGAAGTGTACCCTCTCGCTATTTCATTCAATGACCCATTCACTAATTTTCAGCTGTGGGTTCCGGTTAAACAGAGT‑CATATGACGAAGATTAAATAATAAAAAACAAAGAAGCC                                                                                                                                              >  1:35771/1‑141  ccataataaatAAATGATTTATATGTTGAAGTGTACCCTCTCGATATTTCATTTAATGACCCATTCACTAAAATTCAGCTTTGGATACCTGTTAAACAGAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCC                                                                                                                                              <  2:478898/130‑1         AACGAAATGATTTATATGTTGAAGTGTACCCTCTCGATATTTCATTTAATGACCCATTCACTAAAATTCAGCTTTGGATTCCTGTTAAACAGAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTAAT                                                                                                                                       <  1:360534/141‑1          ACGAAATGATTTCTATGTTGAAGTGTACCCTCTCGATATTTCATTTAATGACCCATTCACTAAAATTCAGCTTTGGATTCCTGTTAAACAGAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTAATA                                                                                                                                      <  1:686988/141‑1                                       CTCTCGATATTTCATTTAATGACCCATTCACTAAAATTCAGCTTTGGATTCCTGTTAAACAGAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTAATA‑TATCTAAGGCCATTTGTAGACCTATAGAT                                                                                                        <  1:538461/141‑1                                           CGATATTTCATTTAATGACCCATTCACTAAAATTCAGCTTTGGATTCCTGTTAAACAGAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTAATAGAATCTAAGGCCATTTGTAGACCTATAGATATA                                                                                                     <  2:268159/141‑1                                                       TAATGACCCATTCACTAAAATTCAGCTTTGGATTCCTGTTAAACAGAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTAATAGAATCTAAGGCCATTTGTAGACCTATAGATATATTAGGGGGCTTC                                                                                         <  1:194817/141‑1                                                                       AAAATTCAGCTTTGGATTCCTGTTAAACAGAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTAATAGAATCTAAGGCCATTTGTAGACCTATAGATATATTAG                                                                                                 <  1:431066/117‑1                                                                       AAAATTCAGCTTTGGATTCCTGTTAAACAGAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTAATAGAATCTAAGGCCATTTGTAGACCTATAGATATATTAG                                                                                                 <  1:431035/117‑1                                                                       AAAATTCAGCTTTGGATTCCTGTTAAACAGAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTAATAGAATCTAAGGCCATTTGTAGACCTATAGATATATTAG                                                                                                 >  2:431035/1‑117                                                                       AAAATTCAGCTTTGGATTCCTGTTAAACAGAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTAATAGAATCTAAGGCCATTTGTAGACCTATAGATATATTAG                                                                                                 >  2:431066/1‑117                                                                                                                                            GCCCCCTAATAGAATCTAAGGCCATTTGTAGACCTATAGATATATTAGGGGGCTTCTTTGTTTTTTATTATTTAATCTTCGTCATAAGGACTCTGTTTAACAGGAATCCAAAGCTGAATTTTAGTGAATGGGTCATTAAAT    >  2:368100/1‑141                                                                                                                                             CCCCCTAATAGAATCTAAGGCCATTTGTAGACCTATAGATATATTAGGGGGCTTCTTTGTTTTTTATTATTTAATCTTCGTCATAAGGACTCTGTTTAACAGGAATCCAAAGCTGAATTTTAGTGAATGGGTCATTAAATG   <  2:813563/141‑1                                                                                                                                              CCCCTAATAGAATCTAAGGCCATTTGTAGACCTATAGATATATTAGGGGGCTTCTTTGTTTTTTATTATTTAATCTTCGTCATAAGGACTCTGTTTAACAGGAATCCAAAGCTGAATTTTAGTGAATGGGTCATTAAATGc  >  2:642270/1‑140                                                                                                                                                                                                                                                                                            GCCATATGAACGAAATGATTTATATGTTGAAGTGTACCCTCTCGATATTTCATTTAATGACCCATTCACTAAAATTCAGCTTTGGATTCCTGTTAAACAGAGTCCTTATGACGAAGATTAAATAATAAAAAACAAAGAAGCCCCCTAATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/1623395‑1623544 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccccctaataGAATCTAAGGCCATTTGTAGACCTATAGATATATTAGGGGGCTTCTTTGTTTTTTATTATTTAATCTTCGTCATAAGGACTCTGTTTAACAGGAATCCAAAGCTGAATTTTAGTGAATGGGTCATTAAATGA  <  CP000730/1623575‑1623444

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.