| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 370478 | 67 (1.960) | 4 (0.130) | 4/252 | 4.7 | 6.9% | intergenic (+26/+101) | nanE/USA300HOU_0339 | N‑acylglucosamine‑6‑phosphate 2‑epimerase/hypothetical membrane protein |
| ? | CP000730 | = 370534 | 47 (1.500) | intergenic (+82/+45) | nanE/USA300HOU_0339 | N‑acylglucosamine‑6‑phosphate 2‑epimerase/hypothetical membrane protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACCGGATATGTATAAACGTGTGATGGACTTAGGCGTTCATTGTTCAGTCGTTGGTGGTGCGATAACACGACCAAAAGAAATTACGAAACGTTTTGTTCAAATTATGGAAGATTAAATGATAACGATAAAAAAACGAGATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/370338‑370478‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaacgagatgaACCCATTACATTCATTCAGCCACCTAAGATAATTAGGTGCCTTTAATTAATGATGGTCATCTCGTTTTTTTATCGTTATCATTTAATCTTCCATAATTTGAACAAAACGTTTCGTAATTTCTTTTGGTCGTGTTATCGC < CP000730/370534‑370396 ACCGGATATGTATAAACGTGTGATGGACTTAGGCGTTCATTGTTCAGTCGTTGGTGGTGCGATAACACGACCAAAAGAAATTACGAAACGTTTTGTTCAAATTATGGAAGATTAAATGATAACGATAAAAAAACGAGATGA < 1:169012/141‑1 GTGCGAGAAAACGACCAAAAGAAATTACGAAACGTTTCGTTGAAATTATCGAAGATTAAATGATCACGATAACAAATCGAGATGAACCCATTACATTCATTCAGCCACCTAAGATAATTAGTTGCCCTTACTTAATGATGG < 2:38929/141‑1 GATAACACGACCAAAAGAAATTACGAAACGGTTTGTTCAAATTATGGAAGATTAAATGATAACGATAAAAAAACGAGATGAACCCATTACAGTCATTCAGCCACCTAAGATAATTAGGTGCCTTTAATTAATGATGGTCAT < 2:301778/141‑1 ACACGACCAAAAGAAATTACGAAACGTTTTGTTCAAATTATGGAAGATTAAATGATAACGATAAAAAAACGAGATGAACCCATTACATTCATTCAGCCACCTAAGATAATTAGGTGCCTTTAATTAATGATGGTCATCTCG < 1:81143/141‑1 ATGATAACGATAAAAAAACGAGATGAACCCATTACATTCATTCAGCCACCTAAGATAATTAGGTGCCTTTAATTAATGATGGTCATCTCGTTTTTTTATCGTTATCATTTAATCTTCCATAATTTGAACAAAACGTTTCGT > 2:132504/1‑141 AAAACGAGATGAACCCATTACATTCATTCAGCCACCTAAGATAATTAGGTGCCTTTAATTAATGATGGTCATCTCGTTTTTTTATCGTTATCATTTAATCTTCCATAATTTGAACAAAACGTTTCGTAATTTCTTTTGGTC < 1:271397/141‑1 AAACGAGATGAACCCATTACATTCATTCAGCCACCTAAGATAATTAGGTGCCTTTAATTAATGATGGTCATCTCGTTTTTTTATCGTTATCATTTAATCTTCCATAATTTGAACAAAACGTTTCGTAATTTCTTTTGGTCt > 2:206885/1‑140 AAACGAGATGAACCCATTACATTCATTCAGCCACCTAAGATAATTAGGTGCCTTTAATTAATGATGGTCATCTCGTTTTTTTATCGTTATCATTTAATCTTCCATAATTTGAACAAAACGTTTCGTAATTTCTTTTGGTCG > 2:241231/1‑141 AAACGAGATGAACCCATTACATTCATTCAGCCACCTAAGATAATTAGGTGCCTTTAATTAATGATGGTCATCTCGTTTTTTTATCGTTATCATTTAATCTTCCATAATTTGAACAAAACGTTTCGTAATTTCTTTTGGTCG > 1:332480/1‑141 GAGATGAACCCATTACATTCATTCAGCCACCTAAGATAATTAGGTGCCTTTAATTAATGATGGTCATCTCGTTTTTTTATCGTTATCATTTAATCTTCCATAATTTGAACAAAACGTTTCGTAATTTCTTTTGGTCGTGTT < 2:294077/141‑1 AGATGAACCCATTACATTCATTCAGCCACCTAAGATAATTAGGTGCCTTTAATTAATGATGGTCATCTCGTTTTTTTATCGTTATCATTTAATCTTCCATAATTTGAACAAAACGTTTCGTAATTTCTTTTGGTCGTGTTA < 1:65864/141‑1 AGATGAACCCATTACATTCATTCAGCCACCTAAGATAATTAGGTGCCTTTAATTAATGATGGTCATCTCGTTTTTTTATCGTTATCATTTAATCTTCCATAATTTGAACAAAACGTTTCGTAATTTCTTTTGGTCGTGTTA > 1:316310/1‑141 GAACCCATTACATTCATTCAGCCACCTAAGATAATTAGGTGCCTTTAATTAATGATGGTCATCTCGTTTTTTTATCTTTATCATTTAATCTTCCATAATTTGAACAAACCGTTTCGTAATTTCTTTTGGTCGTGTTATCGC > 2:246470/1‑141 ACCGGATATGTATAAACGTGTGATGGACTTAGGCGTTCATTGTTCAGTCGTTGGTGGTGCGATAACACGACCAAAAGAAATTACGAAACGTTTTGTTCAAATTATGGAAGATTAAATGATAACGATAAAAAAACGAGATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/370338‑370478‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaacgagatgaACCCATTACATTCATTCAGCCACCTAAGATAATTAGGTGCCTTTAATTAATGATGGTCATCTCGTTTTTTTATCGTTATCATTTAATCTTCCATAATTTGAACAAAACGTTTCGTAATTTCTTTTGGTCGTGTTATCGC < CP000730/370534‑370396 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |