New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2494782 =	42 (1.230)	3 (0.100)	3/254	5.3	6.8%	intergenic (+1/+62)	USA300HOU_2358/USA300HOU_2359	hypothetical protein/hypothetical membrane protein
	?	CP000730	2494828 =	43 (1.370)					intergenic (+47/+16)	USA300HOU_2358/USA300HOU_2359	hypothetical protein/hypothetical membrane protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AATCCTCCCTCACCTTTTCATTATATCCGATTATACCTATTATAACAGTGACAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACAGCGCCAAAAAT  >  CP000730/2494642‑2494921                                                                                                                                             |                                                                                                                                            aaTCCTCCCTCACCTTTTCATTATATCCGATTATACCTATTATAACAGTGACAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACaaataaa                                                                                                                                             >  2:175487/1‑141 (MQ=255) aaTCCTCCCTCACCTTTTCATTATATCCGATTATACCTATTATAACAGTGACAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACaaataaa                                                                                                                                             >  2:78037/1‑141 (MQ=255) aaTCCTCCCTCACCTTTTCATTATATCCGATTATACCTATTATAACAGTGACAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACaaataaa                                                                                                                                             >  2:77989/1‑141 (MQ=255)      tccctcACCTTTTCATTATATCCGATTATACCTATTATAACAGTGACAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGc                                                                                                                                        >  2:368561/1‑141 (MQ=255)                     ttATATCCGATTATACCTATTATAACAGTGACAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAACTAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGAcgccc                                                                                                                         >  2:29805/1‑139 (MQ=255)                         atCCGATTATACCTATTATAACAGTGACAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTa                                                                                                                     <  1:45955/141‑1 (MQ=255)                          tCCGATTATACCTATTATAACAGTGACAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTAc                                                                                                                    <  2:96391/141‑1 (MQ=255)                              aTTATACCTATTATAACAGTGACAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAAc                                                                                                                <  2:165233/141‑1 (MQ=255)                                   aCCTATTATAACAGTGACAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCtt                                                                                                           >  1:339135/1‑141 (MQ=255)                                   aCCTATTATAACAGTGACAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCtt                                                                                                           <  1:31471/141‑1 (MQ=255)                                   aCCTATTATAACAGTGACAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCtt                                                                                                           >  1:205176/1‑141 (MQ=255)                                      tattatAACAGTGACAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGta                                                                                                        >  1:27022/1‑141 (MQ=255)                                               aGTGACAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTATATAGCtatta                                                                                               >  1:269631/1‑141 (MQ=255)                                                gTGACAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCtattat                                                                                              <  2:247710/141‑1 (MQ=255)                                                   aCAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTc                                                                                           >  2:149391/1‑141 (MQ=255)                                                   aCAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTc                                                                                           >  1:192576/1‑141 (MQ=255)                                                   aCAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTc                                                                                           >  2:167233/1‑141 (MQ=255)                                                          aGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCtatttat                                                                                    <  1:7734/141‑1 (MQ=255)                                                              aaGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTaaa                                                                                <  2:123811/141‑1 (MQ=255)                                                                 atatGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTa                                                                             <  1:81567/141‑1 (MQ=255)                                                                     gACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAACATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGAc                                                                         <  1:129763/141‑1 (MQ=255)                                                                      acacAACTGAATTTAGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACg                                                                        >  2:261580/1‑141 (MQ=255)                                                                            cTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTattatt                                                                                             >  2:79442/1‑114 (MQ=255)                                                                            cTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTattatt                                                                                             <  1:79442/114‑1 (MQ=255)                                                                            cTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACtt                                                                  >  1:124077/1‑141 (MQ=255)                                                                                aTTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTAttt                                                                                            <  2:177989/111‑1 (MQ=255)                                                                                aTTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTAttt                                                                                            >  1:177989/1‑111 (MQ=255)                                                                                     gTTTAGCACATAGTACGACAGCTAAAATAACTTTCCATCACGCGCTATACAAATACAATAGCTATACCATGACGCTCGCTACACACGTCTTGTCCAGCCATTATTTCCATTTATTAAGTCATCACGGCCCGTCAGTACGtt                                                         >  2:144941/1‑141 (MQ=255)                                                                                      tttAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGttt                                                        >  1:39504/1‑141 (MQ=255)                                                                                      tttAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGttt                                                        >  1:62559/1‑141 (MQ=255)                                                                                          gCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTtgtg                                                    >  1:141294/1‑141 (MQ=255)                                                                                               tAGTATGACAGCTAAAATAACTTTACTTCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACCTCTTGTATAGCTATTATTTCTATTTATTAAATTATAACGGCACTTCAGTACGTTTTGTGCTATg                                               >  2:196994/1‑141 (MQ=255)                                                                                                   aTGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGtttt                                           >  1:116975/1‑141 (MQ=255)                                                                                                   aTGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGtttt                                           <  1:277545/141‑1 (MQ=255)                                                                                                     gACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCt                                         <  2:363135/141‑1 (MQ=255)                                                                                                      aCAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTa                                        >  1:177898/1‑141 (MQ=255)                                                                                                      aCAGCTAAAATAACTTTACATCAAGCGCTATACAAAGAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTa                                        >  1:177913/1‑141 (MQ=255)                                                                                                                  aCTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGaa                            <  2:77578/141‑1 (MQ=255)                                                                                                                    tttACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGaaac                          <  1:26792/141‑1 (MQ=255)                                                                                                                     ttACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGaaact                         <  1:167233/141‑1 (MQ=255)                                                                                                                                  tataCAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACAg            <  1:143447/141‑1 (MQ=255)                                                                                                                                            aaataGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACAGCGCCAAAAAt  <  1:368561/141‑1 (MQ=255)                                                                                                                                             |                                                                                                                                            AATCCTCCCTCACCTTTTCATTATATCCGATTATACCTATTATAACAGTGACAAAAAAGCGAAGATATGACACAACTGAATTTGGTTTAGCACATAGTATGACAGCTAAAATAACTTTACATCAAGCGCTATACAAATAAAATAGCTATACCATGACGCTCGCTACAAACGTCTTGTATAGCTATTATTTCTATTTATTAAATTATGACGGCACTTCAGTACGTTTTGTGCTATGTTTTCTAACAATAGCTGAAACTAAACTTGATACAGCGCCAAAAAT  >  CP000730/2494642‑2494921

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.