New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2609406	42 (1.230)	5 (0.160)	5/252	4.2	11.3%	intergenic (‑236/‑199)	USA300HOU_2471/USA300HOU_2472	hypothetical protein/hypothetical protein
	?	CP000730	= 2609438	40 (1.280)					intergenic (‑268/‑167)	USA300HOU_2471/USA300HOU_2472	hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAATAAATAAAGGGATTTGTGATGTATTTCACAAATTTATCACTATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAACATGATACGGAATATGAGGTTCCTGTATCACATTAGAAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTATTAAACTTCCGTTCTTTGAAT  >  CP000730/2609266‑2609544                                                                                                                                             |                                                                                                                                           aaataaatAAAGGGATTTGTGATGTATTTCACAAATTTATCACTATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTaa                                                                                                                                            <  1:299470/141‑1 (MQ=255)   ataaataaAGGGATTTGTGATGTATTTCACAAATTTATCACTATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAACa                                                                                                                                          <  1:244847/141‑1 (MQ=255)          aaGGGATTTGTGATGTATTTCACAAATTTATCACTATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAATGTGATAca                                                                                                                                   >  1:314956/1‑140 (MQ=255)          aaGGGATTTGCGATGTATTTCACAAATTTATCACTATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAACATGATACg                                                                                                                                   <  2:80537/141‑1 (MQ=255)                   gtgATGTATTTCACAAATTTATCACTATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAACATGATACGGAATATGAg                                                                                                                          <  2:186905/141‑1 (MQ=255)                    tgAGGTATTTCACAGATATATCACGATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAACATGATACGGAATATGAgg                                                                                                                         <  2:31538/141‑1 (MQ=255)                     gATGTATTTCACAAATTTATCACTATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAACATGATACGGAATATGAGGt                                                                                                                        >  2:50789/1‑141 (MQ=255)                        gTATTTCACAAATTTATCACTATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAACATGATACGGAATATGAGGTTcc                                                                                                                     <  1:319942/141‑1 (MQ=255)                          aTTTCACAAATTTATCACCATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAACATGATACGGAATATGAGGTTCCTg                                                                                                                   <  2:325108/141‑1 (MQ=255)                           tttCACAAATTTATCACTATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAACATGATACGGAATATGAGGTTCCTGt                                                                                                                  <  1:123710/141‑1 (MQ=255)                               acaAATTTATCACTATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAACATGATACGGAATATGAGGTTCCTGTATca                                                                                                              >  2:84038/1‑141 (MQ=255)                                  aaTTTATCACTATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAACATGATACGGAATATGAGGTTCCTGTATCACAt                                                                                                           >  1:63358/1‑141 (MQ=255)                                        tCACTATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAACATGATACGGAATATGAGGTTCCTGTATCACATTAGAAg                                                                                                     >  1:13080/1‑141 (MQ=255)                                            tATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAACATGATACGGAATATGAGGTTCCTGTATCACATTAGAAGCttt                                                                                                 <  2:295910/141‑1 (MQ=255)                                                ttGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAACATGATACGGAATATGAGGTTCCTGTATCACATTAGAAGCTTTTttg                                                                                             <  1:8253/141‑1 (MQ=255)                                                ttGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAACATGATACGGAATATGAGGTTCCTGTATCACATTAGAAGCTTTTttg                                                                                             <  1:8214/141‑1 (MQ=255)                                                    aaaaTTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAACATGATACGGAATATTAGGTTCCTGTATCACATTAGAAGCTTGTTTGTTGc                                                                                         >  2:114031/1‑141 (MQ=255)                                                           aGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAACATGATACGGAATATGAGGTTCCTGTATCACATTAGAAGCTTTTTTGTTGCGGTGCtt                                                                                  <  1:356001/141‑1 (MQ=255)                                                            gAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAACATGATACGGAATATGAGGTTCCTGTATCACATTAGAAGCTTTTTTGTTGCGGTGCTta                                                                                 <  1:219803/141‑1 (MQ=255)                                                            gAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAACATGATACGGAATATGAGGTTCCTGTATCACATTAGAAGCTTTTGTGTTGTGGTGCTta                                                                                 >  2:304211/1‑141 (MQ=255)                                                               atatTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAACATGATACGGAATATGAGGTTCCTGTATCACATTAGAAGCTTTTTTGTTGCGGTGCTTatat                                                                              <  2:65674/141‑1 (MQ=255)                                                                 atTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAACATGATACGGAATATGAGGTTCCTGTATCACATTAGAAGCTTTTTTGTTGCGGTGCTTATATta                                                                            <  1:11815/141‑1 (MQ=255)                                                                     aaTTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAACATGATACGGAATATGAGGTTCCTGTATCACATTAGAAGCTTTTTTGTTGCGGTGCTTATATtaataa                                                                        <  1:319938/141‑1 (MQ=255)                                                                       ttATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAACATGATACGGAATATGAGGTTCCTGTATCACATTAGAAGCTTTTTTGTTGCGGTGCTTATATTAATAATg                                                                      <  2:94935/141‑1 (MQ=255)                                                                             aaaaGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAACATGATACGGAATATGAGGTTCCTGTATCACATTAGAAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCatga                                                                >  1:189511/1‑141 (MQ=255)                                                                                   ttAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAACATGATACGGAATATGAGGTTCCTGTATCACATTAGAAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAAc                                                          <  1:50789/141‑1 (MQ=255)                                                                                     aataaGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAACATGATACGGAATATGAGGTTCCTGTATCACATTAGAAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGc                                                        <  2:95681/141‑1 (MQ=255)                                                                                     aataaGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAACATGATACGGAATATGAGGTTCCTGTATCACATTAGAAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGc                                                        <  1:271753/141‑1 (MQ=255)                                                                                      ataaGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAACATGATACGGAATATGAGGTTCCTGTATCACATTAGAAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCa                                                       >  1:316648/1‑141 (MQ=255)                                                                                        aggTCAGAAAAGATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAACATGATACGGAATGTGAGGTTCCTGTATCACATTAGAAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATg                                                     <  2:186151/139‑1 (MQ=255)                                                                                               aaaaTATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAACATGATACGGAATATGAGGTTCCTGTATCACATTAGAAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCtt                                              <  1:281149/141‑1 (MQ=255)                                                                                                  atatGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAACATGATACGGAATATGAGGTTCCTGTATCACATTAGAAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGc                                           <  1:84038/141‑1 (MQ=255)                                                                                                   tatGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAACATGATACGGAATATGAGGTTCCTGTATCACATTAGAAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCt                                          <  2:291060/141‑1 (MQ=255)                                                                                                   tatGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAACATGATACGGAATATGAGGTTCCTGTATCACATTAGAAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCt                                          <  1:82850/141‑1 (MQ=255)                                                                                                          aaaTGTAGATGTTCTTTAGACATTAAAAGCTTCTAACATGATACGGAATATGAGGTTCCTGTATCACATTAGAAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGaa                                   <  2:63358/141‑1 (MQ=255)                                                                                                             tGTAGATGTTCTTTAGACATTAAAAGCTTCTAACATGATACGGAATATGAGGTTCCTGTATCACATTAGAAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCa                                >  1:108878/1‑141 (MQ=255)                                                                                                             tGTAGATGTTCTTTAGACATTAAAAGCTTCTAACATGATACGGAATATGAGGTTCCTGTATCACATTAGAAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCa                                >  1:108916/1‑141 (MQ=255)                                                                                                                 gATGTTCTTTAGACATTAAAAGCTTCTAACATGATACGGAATATGAGGTTCCTGTATCACATTAGAAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCAtata                            >  1:121098/1‑141 (MQ=255)                                                                                                                     ttCTTTAGACATTAAAAGCTTCTAACATGATACGGAATATGAGGTTCCTGTATCACATTAGAAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCt                        >  2:216276/1‑141 (MQ=255)                                                                                                                      tCTTTAGACATTAAAAGCTTCTAACATGATACGGAATATGAGGTTCCTGTATCACATTAGAAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTa                       >  2:58560/1‑141 (MQ=255)                                                                                                                      tCTTTAGACATTAAAAGCTTCTAACATGATACGGAATATGAGGTTCCTGTATCACATTAGAAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTa                       >  1:129942/1‑141 (MQ=255)                                                                                                                           aGACATTAAAAGCTTCTAACATGATACGGAATATGAGGTTCCTGTATCACATTAGAAGCTTTTTTTTTTTTTTTTTTATATTAATAATGGCATGATTGAACGCGTGCTGTCTTAGCTCCAAGAATCATATTATCTATTaaa                  >  2:275963/1‑141 (MQ=255)                                                                                                                                     aGCTTCTAACATGATACGGAATATGAGGTTCCTGTATCACACTAGAAGCTTTTTTTTTTTTTTTTTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTCTTAAACTTCCGTTCt        >  2:178443/1‑141 (MQ=255)                                                                                                                                           tAACATGATACGGAATATGAGGTTCCTGTATCACATTAGAAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTATTAAACTTCCGTTCTTTGAat  <  1:36413/141‑1 (MQ=255)                                                                                                                                             |                                                                                                                                           AAATAAATAAAGGGATTTGTGATGTATTTCACAAATTTATCACTATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAACATGATACGGAATATGAGGTTCCTGTATCACATTAGAAGCTTTTTTGTTGCGGTGCTTATATTAATAATGGCATGAATGAACGCATGCTGTCTTAGCTCCAAGAATCATATAAGCTATTAAACTTCCGTTCTTTGAAT  >  CP000730/2609266‑2609544

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.