New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	512620 =	13 (1.450)	6 (1.030) +TTATCTTGTCCATTTTATTTTTTAACCAAAATTTGATTAAAAAAC	6/170	NT	45.6%	intergenic (+688/‑173)	recR/rrs1	recombination protein RecR/16S ribosomal RNA
	?	CP000730	= 517814	9 (1.010)					noncoding (114/114 nt)	rrf1	5S ribosomal RNA

AATTACATTCATATGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTTCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGCAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGA  >  CP000730/517684‑517945                                                                                                                                   |                                                                                                                                    aaTTACATTCATATGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTTCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGAt                                                                                                                           >  2:97020/1‑141 (MQ=32) aaTTACATTCATATGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttaat                                                                                                                           <  2:21254‑M2/141‑11 (MQ=255)                             gCAAGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttaatcaaattttggttaaaaaataaaatggac                                                                                               <  1:65251‑M2/141‑39 (MQ=255)                               aaGGAGGTCACACCTGTTCCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttaatcaaattttggttaaaaaataaaatggacaa                                                                                             >  1:63964‑M2/1‑101 (MQ=255)                                      tCACACCTGTTTCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGCGCTCtttttt                                                                                      >  2:27279/1‑141 (MQ=17)                                                ttCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTaaa                                                                            <  1:97020/141‑1 (MQ=34)                                                   cATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACg                                                                         >  1:34924/1‑141 (MQ=32)                                                        cGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttaatcaaattttggttaaaaaataaaatggacaagataaaaaaagttattgacttaaat                                                                    <  2:9623‑M2/141‑66 (MQ=255)                                                                        gCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGCAAAcaca                                                    <  1:27859/141‑1 (MQ=33)                                                                            cTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttaatcaaattttggttaaaaaataaaatggacaagataaaaaaagttattgacttaaatgttgataaaatgtataatta                                                <  2:18092‑M2/141‑86 (MQ=255)                                                                            cTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCACAGGGAAAAGCAAACACAAAGa                                                >  1:51525/1‑141 (MQ=255)                                                                                           aGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGCAAACACAAAGAAAAATGGCTTGGCGa                                 <  1:13687/141‑1 (MQ=33)                                                                                            gTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttaatcaaattttggttaaaaaataaaatggacaagataaaaaaagttattgacttaaatgttgataaaatgtataattaattcttgtcggtaaga                                >  1:82572‑M2/1‑40 (MQ=255)                                                                                                   ttACGTTCCGGTAGAGTAGAAAGTTGACAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGCAAACACAAAGAAAAATGGCTTGGCGAAGTGaaaa                         <  2:8926/141‑1 (MQ=16)                                                                                                     aCGTTCCGCTAGAGTAGAACGTTGCCAGGCAgttttttaatcaaattttggttaaaaaataaaatggacaagataaaaaaagttattgacttaaatgttgataaaatgtataattaattcttgtcggtaagaaaaatgaac                       >  1:17387‑M2/1‑31 (MQ=255)                                                                                                                     gAACGTTGCCAGGCAgttttttaatcaaattttggttaaaaaataaaatggacaagataaaaaaagttattgacttaaatgttgataaaatgtataattaattcttgtcggtaagaaaaatgaacattgaaaactgaatga       <  1:34728‑M2/141‑127 (MQ=255)                                                                                                                         gTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGCAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACgag   >  1:13046/1‑141 (MQ=33)                                                                                                                          ttGCCAGGCAgttttttaatcaaattttggttaaaaaataaaatggacaagataaaaaaagttattgacttaaatgttgataaaatgtataattaattcttgtcggtaagaaaaatgaacattgaacactgaatgacaata  <  2:86062‑M2/141‑132 (MQ=255)                                                                                                                                   |                                                                                                                                    AATTACATTCATATGTCTGGTGACTATAGCAAGGAGGTCACACCTGTTTCCATGCCGAACACAGAAGTTAAGCTCCTTAGCGTCGATGGTAGTCGAACTTACGTTCCGCTAGAGTAGAACGTTGCCAGGCAAAAAATGGATGCGATGAGCCGCATTGAGACCGCAAGGTCTCTTTTTTTATGTCTAAAACGTCAAAATAAAAAGCAAACACAAAGAAAAATGGCTTGGCGAAGTGAAAACGTTTGAATCTGACGAAACGAGA  >  CP000730/517684‑517945

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.