New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 1996883161 (0.940)5 (0.030)
+ATTAGTAAAA		 4/276 13.5 3.0% noncoding (1/76 nt) USA300HOU_t0035 tRNA‑Asp
?CP000730 1996984 = 185 (1.080)noncoding (90/93 nt) USA300HOU_t0037 tRNA‑Ser
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AATCCATTGCTCTACCAACTGAGCTACTGAACCATAATAAAAATGTAATGATGGCGGTCTCGACGGGAATCGAACCCGCGATCTCCTGCGTGACAGGCAGGCGTGTTAACCGCTACACTACGAGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/1996757‑1996883
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGAGGAAGAGG  >  CP000730/1996984‑1996995
                                                                                                                               ||||||||||            
AATCCATTGCTCTACCAACTGAGCTACTGAACCATAATAAAAATGTAATGATGGCGGTCTCGACGGGAATCGAACCCGCGATCTCCTGCGTGACAGGCAGGCGTGTTACCCGCTACACTACGCGACCCATAGAAAAACGaataggaagg  >  2:995247/1‑139
                     AGCTACTGAACCATAATAAAAATGTAATGATGGCGGTCTCGACGGGAATCGAACCCGCGATCTCCTGCGTGACAGGCAGGCGTGTTCACCGCTACACTACGAGACCATTAGTAAAACGGA          >  2:501859/1‑120
                     AGCTACTGAACCATAATAAAAATGTAATGATGGCGGTCTCGACGGGAATCGAACCCGCGATCTCCTGCGTGACAGGCAGGCGTGTTAACCGCTACACTACGAGACCATTAGTAAAACGGA          <  1:501859/120‑1
                                            GTAATGATGGCGGTCTCGACGGGAATCGAACCCGCGATCTCCTGCGTGCCAGGCAGGCGTGTTAACCGCTACACTACGAGACCATTAGTAAAACGGAGGA       >  1:149854/1‑100
                                            GTAATGATGGCGGTCTCGACGGGAATCGAACCCGCGATCTCCTGCGTGACAGGCAGGCGTGTTAACCGCTACACTACGAGACCATTAGTAAAACGGAGGA       <  2:149854/100‑1
                                                          CTCGACGGGAATCGAACCCGCGATCTCCTGCGTGACAGGCAGGCGTGTTAACCGCTACACTACGAGACCA                       <  2:135363/70‑1
                                                          CTCGACGGGAATCGAACCCGCGATCTCCTGCGTGACAGGCAGGCGTGTTAACCGCTACACTACGAGACCA                       >  1:1566466/1‑70
                                                          CTCGACGGGAATCGAACCCGCGATCTCCTGCGTGACAGGCAGGCGTGTTAACCGCTACACTACGAGACCA                       >  2:1539089/1‑70
                                                          CTCGACGGGAATCGAACCCGCGATCTCCTGCGTGACAGGCAGGCGTGTTAACCGCTACACTACGAGACCA                       <  2:1566466/70‑1
                                                          CTCGACGGGAATCGAACCCGCGATCTCCTGCGTGACAGGCAGGCGTGTTAACCGCTACACTACGAGACCA                       <  1:1539089/70‑1
                                                                                                                               ||||||||||            
AATCCATTGCTCTACCAACTGAGCTACTGAACCATAATAAAAATGTAATGATGGCGGTCTCGACGGGAATCGAACCCGCGATCTCCTGCGTGACAGGCAGGCGTGTTAACCGCTACACTACGAGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/1996757‑1996883
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGAGGAAGAGG  >  CP000730/1996984‑1996995

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.