| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP000730 | 632,405 | T→G | I177S (ATT→AGT) | proP → | MFS family major facilitator transporter, proline/betaine:cation symporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 632,405 | 0 | T | G | 99.0% | 677.9 / NA | 197 | I177S (ATT→AGT) | proP | MFS family major facilitator transporter, proline/betaine:cation symporter |
| Reads supporting (aligned to +/- strand): ref base T (1/1); new base G (110/84); total (111/86) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 197 total aligned reads displayed.
GTACTACAAGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGATTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGCTGGAAGAATCACCAGTTTTCGAAAATGATGTT > CP000730/632260‑632550 | gTACTACAAGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGc < 2:129243/149‑1 (MQ=255)gTACTACAAGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGc < 1:1017364/149‑1 (MQ=255)gTACTACAAGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGc < 2:588372/149‑1 (MQ=255)gTACTACAAGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGc < 1:607284/149‑1 (MQ=255) tactacAAGGGTTTCCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCt < 1:1581399/149‑1 (MQ=255) actacAAGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTg > 2:1338781/1‑149 (MQ=255) tacAAGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCGGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCGCTGAGGAGTGCTGTa > 1:718759/1‑149 (MQ=255) tacAAGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTa > 1:490712/1‑149 (MQ=255) tacAAGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTa > 2:832275/1‑149 (MQ=255) acAAGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTAt > 2:170390/1‑149 (MQ=255) aaGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGACTCATCTACAGAGAAGCGCCGTCTCATGTAAGTTAGTGGACTAGAGGTAGGGACCAATTCAGGTTACATGGCTG‑CTTCGATTATGAGTGCTGTATTa > 1:1694644/1‑149 (MQ=255) aaGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTa > 1:416110/1‑149 (MQ=255) aGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGTAATGTGGCCCTTATC‑GACCACCACGCCGCCTTCAAGTATGAGTGCTGTATTaa > 1:654521/1‑149 (MQ=255) aGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTaa > 2:1545523/1‑149 (MQ=255) aGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTaa < 1:621665/149‑1 (MQ=255) aGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTaa > 1:470094/1‑149 (MQ=255) tttCAACAGGTGGAGAGAATGCGGGAGCAATGACATATGTTGCCGAATCATATCCAGATAAGCGTCGTAACTCATTAGGTAGTGGAATAGAAATTGCGACATTATCAGGTTACATAGCTG‑CTTCATGAATGCTTGCCGTATCaagcttc > 2:1417315/1‑144 (MQ=255) ttCAACAGGTGGAGGGTATGCGGGGGCAATGACATATGTTGCCGAATCACCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGCTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCt < 2:889492/149‑1 (MQ=255) ttCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCt < 2:329239/149‑1 (MQ=255) tCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCtt < 1:1539954/149‑1 (MQ=255) cAACATGGGGAGACTATGCCGGGGCAATGACATATTTTGCCGAATCATCTCCATATAAGCTTCGTAACTCATTACGTATTAGACCAGCAATTGCGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCttt < 2:948605/149‑1 (MQ=255) aaCAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCCGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGACATTCGCACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCtttt < 1:909570/149‑1 (MQ=255) aaCAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTCCATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCtttt > 1:1601219/1‑149 (MQ=255) aaCAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCtttt < 1:1114418/149‑1 (MQ=255) aaCAGGTGGAGAGCATGCGGGGGTAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCtttt < 1:1204225/149‑1 (MQ=255) cAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTa < 1:1247478/149‑1 (MQ=255) cAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTa < 1:1239687/149‑1 (MQ=255) ggAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGa > 1:540502/1‑149 (MQ=255) aTGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACaa < 1:1106844/149‑1 (MQ=255) aTGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACaa > 2:1252399/1‑149 (MQ=255) gcgcacgCAAGGACATCTGTTTCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATTAGTGCTGTTTTAACATTCTTTTTAACAGATGAACaaag > 2:1664597/7‑148 (MQ=255) gCAATGACATATGTTGCCGAATCATCTCCAGATACGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGcatc > 2:1218965/1‑149 (MQ=255) aCATATGTTGCCGAATCATCTCCAGATAGGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATttgg < 2:142505/149‑1 (MQ=255) cATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATttggt > 2:1333236/1‑149 (MQ=255) cATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATttggt > 1:1301867/1‑149 (MQ=255) ttGCCGAATCATCTGCAGATAAGCGTCGGAACTCAGTAGGTAGTGGACTAGAATTTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGGGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGgaga < 2:1375853/149‑1 (MQ=255) ttGCCGAATCATCTCCATATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGTGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGgaga < 2:1052082/149‑1 (MQ=255) tGCCGAATCATCTCCAGGTAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTGTTTAACAGCTGAACAAATGGCCTCATTTGGGTGgcgag > 1:448348/1‑148 (MQ=255) tGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGaa > 1:1060556/1‑149 (MQ=255) tGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGaa > 1:1516998/1‑149 (MQ=255) gCCGAATCGTCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAAt < 1:328562/149‑1 (MQ=255) ccGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATc > 2:294311/1‑149 (MQ=255) cGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTCACAGATGAACAAATGGCATCATTTGGTTGGAGAATcc < 2:369675/149‑1 (MQ=255) catcTCCAGATAAGAGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTTTTTTTAACAGATGAACAAATGGCATCATTTGGTTGTAGAATCCCATTc < 1:1230779/149‑1 (MQ=255) aGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCg > 1:988444/1‑149 (MQ=255) aTAAGCCTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGt < 1:1634794/149‑1 (MQ=255) tcaGCGTCGGAAATCAATAGGTAGTGGACTAGAAATTGGTACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGtt < 2:1590302/147‑1 (MQ=255) tAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGtt < 1:1422404/149‑1 (MQ=255) gCGTCGTAACTCCTTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGAGGAACAAATGGCATCAATTGGTTGGAGAATCCCATTCTTACTCGGTTTAt > 1:1168359/1‑149 (MQ=255) gCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTAt > 1:77590/1‑149 (MQ=255) cgtcgtAACTCATTAGGTAGTGGGCTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTAtt < 2:1467215/149‑1 (MQ=255) cgtcgtAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTAtt > 1:1478855/1‑149 (MQ=255) cgtcgtAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGCTTGGAGAATCCCATTCTTACTCGGCTTAtt > 2:1501837/1‑149 (MQ=255) gtcgtAACTCATTAGGTAGTGGACTATAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTTGAGAATCCCATTCTTACTCGGTTTATTc < 1:1043241/149‑1 (MQ=255) gtcgtAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTc > 1:1367999/1‑149 (MQ=255) gtcgtAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTc > 2:54746/1‑149 (MQ=255) cgtAACTCATTAGGTAGTGGACTCGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCt > 1:1277379/1‑149 (MQ=255) cgtAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCt > 1:699347/1‑149 (MQ=255) cgtAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCt > 1:931547/1‑149 (MQ=255) aaCTCATTAGGTAGTGGACTAGAAATTGGGACCTTATCAGGGTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAgg < 2:572395/149‑1 (MQ=255) aCTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGa > 1:40281/1‑149 (MQ=255) tAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTGATCGGTTTATTCCTAGAATTTTTc > 2:1430915/1‑149 (MQ=255) tAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTc > 2:152722/1‑149 (MQ=255) ggTAGTGGACTAGAAATTGGGACATTATCAGGTTCCATAGTTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCgg < 2:507314/149‑1 (MQ=255) gTAGTGGACTAGAAATTGGGACGTTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGc > 2:1172527/1‑149 (MQ=255) gTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTTATATTCCTGTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGc > 1:326998/1‑149 (MQ=255) gTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATAAACATTCTTTTTACCAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGc > 2:89639/1‑149 (MQ=255) gTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAACTATGAGTGCTGTATTAACATTCTTTTTAACAGGTGAACAAATGGCAGCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTGGGATTAGTCGGc > 2:754597/1‑149 (MQ=255) gTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CGTCAATTATGAGTGCTGTATTAACTTTCTTTTTAACAGATGGCCAAATGGCAGCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTTCTAGTAGTATTCGGc > 1:223128/1‑149 (MQ=255) tAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCt < 2:1366627/149‑1 (MQ=255) gTGGACTAGAAATTGGGCCATTATCAGGTTACGTAGCTG‑CTTCAATTTTGAGTGCTGTATTAACATTCTTTTTAACAGATGATCAAATGGTTTCATTTGGTTGGAGAATCCCATTCTTTCTCGGTTTATTCCTAGGATTATTCGGCTta < 1:766108/149‑1 (MQ=255) gTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGGATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTta < 1:109543/149‑1 (MQ=255) ggACTAGAAATTGGGACATCATCAGGTTAAATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGGTTATTCCTAGGATTATTCGGAttttt > 2:779185/1‑146 (MQ=255) gAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTAcg < 1:579498/149‑1 (MQ=255) gAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTAcg > 2:637769/1‑149 (MQ=255) gAAATTGAGACACTATCAGGTTACATAGCTG‑CTTCAATGATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTAcg < 2:802992/149‑1 (MQ=255) aaaTTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTAcgt < 1:1333236/149‑1 (MQ=255) aaTTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTAcgtc > 1:805612/1‑149 (MQ=255) aaTTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTAcgtc > 1:1502770/1‑149 (MQ=255) tGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTa < 2:60567/149‑1 (MQ=255) ggACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTGCGTCGTCAg > 1:1353177/1‑149 (MQ=255) ggACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATACGGCTTATATTGACGTCGTAAg > 1:643983/1‑149 (MQ=255) gACATTATCATGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGc < 1:170390/149‑1 (MQ=255) gACATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACCTCGTAAGc > 2:1106608/1‑149 (MQ=255) aCATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGCt > 1:1360842/1‑149 (MQ=255) aCATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGCt > 1:1444752/1‑149 (MQ=255) aCATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGCt > 1:868429/1‑149 (MQ=255) aCATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGCt > 1:284365/1‑149 (MQ=255) cATTATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGCTg < 1:294311/149‑1 (MQ=255) ttATCAGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGCTGga < 1:1015603/149‑1 (MQ=255) aGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTTTTTTTTTTTCAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGCTGGCAGAAt > 2:1064627/1‑149 (MQ=255) aGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGCTGGAAGAAt > 2:1308031/1‑149 (MQ=255) aGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGCTGGAAGAAt > 1:537319/1‑149 (MQ=255) aGGTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGATGGAAGAAt > 2:206369/1‑149 (MQ=255) ggTTACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTAATGCTGATGGTTATTCGGCTTCTATTTACGTCGTAAGCTGGAAGAATc > 1:1414675/1‑149 (MQ=255) ttACATAGCTG‑CTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGCTGGAAGAATCAc < 2:1104713/149‑1 (MQ=255) gctg‑ctTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGCTGGACGAATCACCGGcttt > 2:264393/1‑149 (MQ=255) ctg‑ctTCGATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGACTCCCATTCTTACTCGGTTTATTCCTGGGATTCTTCGGCTTATATTTACGGCATCAGCTAgcagacaagccacttttc > 2:1327986/1‑136 (MQ=255) ctg‑ctTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTTGTAAGCTAGAAGAATCACCAGttttt > 2:1699415/1‑148 (MQ=255) tGATTGCTGTAATAACATTCTCTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGCTGGAAGAATCACCAGTTTTCGAAAATGATGtt < 2:1016950/149‑1 (MQ=255) | GTACTACAAGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTG‑CTTCAATTATGATTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGCTGGAAGAATCACCAGTTTTCGAAAATGATGTT > CP000730/632260‑632550 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |