New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	37094 =	78 (1.340)	4 (0.070)	4/248	5.2	5.2%	coding (21/231 nt)	USA300HOU_0028	hypothetical protein
	?	CP000730	37188 =	73 (1.360)					coding (115/231 nt)	USA300HOU_0028	hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TATTAGTATAATCTCAGTAAGAATGCGTATAAAAATGAAAATTACAACCGATTTTGTAAGTGCTGACGCCTGAGGGAATAGTATGTGCGAGAGACTAATGGCTCGAGCCATACCCCTAGGCAAGCATGCACGTACAAAATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/37235‑37094 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacaaaatcgGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTCAGTAAAATTACAGATAAGAGG  >  CP000730/37188‑37320                                                                                                                                                                                                                                                                                     TATTAGTATAATCTCAGTAAGAATGCGTATAAAAATGAAAATTACAACCGATTTTGTAAGTGCTGACGCCTGAGGGAATAGTATGTGCGAGAGACTAATGGCTAGAGCCATACCCCTAGGCAAGCATGCACGTAC                                                                                                                                              >  2:425869/1‑135   tttGTATAATTTCAGTAAGAATGCGTATAAAAATGAAAATTACAACCGATTTTGTAAGTGCTGACGCCTGAGGGAATAGTATGTGCGAGAGACTAATGGCTCGAGCCATACCCCTAGGCAAGCATGCACGTACAA                                                                                                                                            <  2:170728/132‑1     aaTATAATCTCAGTAAGAATGCGTATAAAAATGAAAATTACAACCGATTTTGTAAGTGCTGACGCCTGAGGGAATAGTATGTGCGAGAGACTTATGGCTCGAGCCATACCCCTAGGCAAGCATGCACGTACAAAA                                                                                                                                          <  2:375879/133‑1     AGTATAATCTCAGTAAGAATGCGTATAAAAATGAAAATTACAACCGATTTTGTAAGTGCTGACGCCTGAGGGAATAGTATGTGCGAGAGACTAATGGCTCGAGCTATACCTTTAGGCAAGCATGCACGTACAAAA                                                                                                                                          <  1:35575/135‑1      GTATAATCTCAGTAAGAATGCGTATAAAAATGATAATTACAACCGATTTTGTAAGTGCTGACGCCTGAGGGAATAGTATGTGCGAGAGACTAATGGCTCAAGCCATACCCCTAGGCAAGCATGCCCGTACAAAAT                                                                                                                                         >  1:310829/1‑135      GTATAATCTAAGTAAGAATGCGTATAAAAATGAAAATTACAACCGATTTTGTAAGTGCTGACGCCTGAGGGAATAGTATGTGCGAGAGACTAATGGCTCGAGCCATACCCCTAGGCAAGCATGCACGTACAAAAT                                                                                                                                         >  2:407406/1‑135        ATAATCTCAGTAAGAATGCGTATAAAAATGAAAATTACAACCGATTTTGTAAGTGCTGACGCCTGAGGGAATAGACGGTGCGAGAGACTAATGGGTCGAGCCATACCCCTAGGAAAGCATGCCCGTACAAAATCG                                                                                                                                       >  2:335111/1‑135           ATCTCAGTAAGAATGCGTATAAAAATGAAAATTACAACCGATTTTGTAAGTGCTGACGCCTGAGGGAATAGTATGTGCGAGAGACTAATGGCTCGAGCCATACCCCTAGGCAAGCATGCACGTACAAAATCGGaa                                                                                                                                    >  2:351497/1‑133           ATCTCAGAAAGAATTCTTATAAAAATTAAAATTACAACCGATCTTGTAAGTGCTGACGCCTGAGGGAATAGTATGTGCGAAAGACTAATAGCTAGAGCCATAACCCTAGGAAAGCATGCACGTACAAAATCGaaa                                                                                                                                    <  1:187428/135‑4                                                             TGCTGACGCCTGAGGGAATAGTATGTGCGAGAGACTAATGGCTCGAGCCATACCCCTAGGCAAGCATGCACGTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGG                                                                                  >  2:465678/1‑135                                                                 GACGCCTGAGGGAATAGTATGTGCGAGAGACTAATGGCTCGAGCCATACCCCTAGGCAAGCATGCACGTACAAAATCGGTTGTAATTTTCATGTCTATACGCATTCTTACTGAGATTATCCTAATAAGAGGAATA                                                                              >  2:245985/1‑135                                                                                                                                 CACGTACAAAATCGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTCAGTAAAATT              <  1:245985/135‑1                                                                                                                                             CGGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTCAGTTAAATAACAGATAAGAGG  <  1:671089/135‑1                                                                                                                                                                                                                                                                                     TATTAGTATAATCTCAGTAAGAATGCGTATAAAAATGAAAATTACAACCGATTTTGTAAGTGCTGACGCCTGAGGGAATAGTATGTGCGAGAGACTAATGGCTCGAGCCATACCCCTAGGCAAGCATGCACGTACAAAATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/37235‑37094 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacaaaatcgGTTGTAATTTTCATTTTTATACGCATTCTTACTGAGATTATACTAATAAGAGGAATAGTAAAAGCAATTCTAAGTAAAATTGCAGATAAGAGGTTTGTTAAAAGCAGTTCTCAGTAAAATTACAGATAAGAGG  >  CP000730/37188‑37320

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.