New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 456294	45 (0.780)	3 (0.050)	3/262	6.0	7.0%	intergenic (+216/‑150)	set24/set25	staphylococcal exotoxin/staphylococcal exotoxin
	?	CP000730	= 456337	36 (0.630)					intergenic (+259/‑107)	set24/set25	staphylococcal exotoxin/staphylococcal exotoxin
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGTGTTAAATACATTACTGTTGTTAAGTTGTTTTTGTAATTCAAAGAGCAGAACAGAGTAACATCATCAGTTGTAGTAAACGATAATCCGGTAAAACAACTAAATGAAATAATGAAAGTCATTTAACCTGAACATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/456159‑456294 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attTAAATATACTTGAATTATTCTTAATGAAAAACAAATATATTTTAATGTTCAGGTTAAA  <  CP000730/456337‑456280                                                                                                                                                                                                    TGTGGTAAATACATTACTGTTGTTAAGTTGTTTTTGTAATTCAAAGAGCAGAACAGAGTAACATCATCAGTTGTAGTAAACGAGAATCCGGTAAAACAACTAAATGAAATAATGAAAGTCATTTAACCTGAACAT                                                             <  2:493969/135‑1                                       ATTCAAAGAGCAGAACAGAGTAACATCATCAGTTGTAGTAAACGATAATCCGGTAAAACAACTAAATGAAATAATGAAAGTCATTTAACCTGAACATTAAAATATATTTG‑‑TTATTCTTAATGAAAAACAAATATA                     <  2:549288/135‑1                                                                       TTGTAGTAAACGATAATCCGGTAAAACAACTAAATGAAATAATGAAAGTCATTTAACCTGAACATTTAAATATACTTGAATTATTCTTAATGAAAAACAAATATATTTTAATGTTCAGGTTAAA  >  1:3085/1‑124                                                                       TTGTAGTAAACGATAATCCGGTAAAACAACTAAATGAAATAATGAAAGTCATTTAACCTGAACATTTAAATATACTTGAATTATTCTTAATGAAAAACAAATATATTTTAATGTTCAGGTTAAA  <  2:3085/124‑1                                                                                                                                                                                                    TGTGTTAAATACATTACTGTTGTTAAGTTGTTTTTGTAATTCAAAGAGCAGAACAGAGTAACATCATCAGTTGTAGTAAACGATAATCCGGTAAAACAACTAAATGAAATAATGAAAGTCATTTAACCTGAACATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/456159‑456294 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attTAAATATACTTGAATTATTCTTAATGAAAAACAAATATATTTTAATGTTCAGGTTAAA  <  CP000730/456337‑456280

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.