Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP00073035,9700TC62.4% 458.3 / inf 583E194E (GAA→GAGtpnIS431mec transposase
Reads supporting (aligned to +/- strand):  ref base T (110/106);  new base C (187/172);  total (302/281)
Fisher's exact test for biased strand distribution p-value = 7.97e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.45e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 591 total aligned reads displayed.

AACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGGTTTAAGTTT  >  CP000730/35848‑36104
                                                                                                                          |                                                                                                                                      
aatcacaAATCTATCATGTCAGTGTTCGTTTAACTTGATAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGACCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCtttt                                                                                                                            <  2:659788/132‑1 (MQ=1)
aatcACTACTATATCATGTCAGTGTTCGTTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCTGTTCTTTTTATATAGAGCGTAAATACACTCAATACCtttt                                                                                                                            <  1:194445/132‑1 (MQ=1)
       tatatATCATGTCGGTGTTCGTTTAACTTGCTAGCATGATGCTAAGTTCGTGGCATTGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTAt                                                                                                                     <  1:234694/131‑1 (MQ=1)
        atatATCATGTCAGTGTTCGTTTAACTAGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTAtt                                                                                                                    >  1:636735/4‑135 (MQ=1)
                         tCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGCCCTGCGGTTCTTTTTATATAGAGCGTAAATACATTAACTACCTTTTAAAGTATTCTTGGTTTTATTTATAc                                                                                                   >  1:106426/1‑135 (MQ=11)
                         tCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGAAAATACATTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATAc                                                                                                   <  1:392004/135‑1 (MQ=11)
                          cgtttAACTTTCTAGCATAATGCAAATATCGTAGCATGGCGAAAATCCGTAGATCTGAAGAAACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACt                                                                                                  >  1:188627/4‑135 (MQ=11)
                          cgtttAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTAAAGAGACCTACGGTTCTTTTTATATAGAGAGTAACTACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACt                                                                                                  >  1:611604/4‑135 (MQ=11)
                          cgtttAACTTGCTAGCATGATGCTAATTTCGTGGCATGGGGAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACtt                                                                                                 >  1:531720/4‑135 (MQ=11)
                           gtttAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTGTTTGCTGTTTTGATACtt                                                                                                 >  1:124359/3‑135 (MQ=255)
                             ttAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTg                                                                                               <  2:518799/135‑1 (MQ=18)
                             ttAACTTGCTAGCATGATGCAAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTg                                                                                               >  1:443754/1‑135 (MQ=12)
                              taccTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTCAAGTATTCTTTGCTGTTTTGATACTTTGa                                                                                              >  1:181734/4‑135 (MQ=255)
                              tAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGa                                                                                              >  1:84479/1‑135 (MQ=17)
                               aaCTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACATGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGAt                                                                                             >  2:186949/1‑135 (MQ=12)
                               aaCTTGCTAGCATGATGCTAATATCATGGCATAGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGAt                                                                                             >  1:117506/1‑135 (MQ=12)
                               aaCTTGCTAACATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGAt                                                                                             >  2:406654/1‑135 (MQ=16)
                                aCTTGCTAGCATGAGGCTAATTTCGTCGCATGGGGAAAATCTGTAGATCTGAAGACACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATa                                                                                            <  2:47687/135‑1 (MQ=11)
                                   tGCTAGCATGATGCTAATTTCGTGGTATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCTGTATCGATACTTTGATACCt                                                                                         <  1:347054/135‑1 (MQ=17)
                                   tGCTAGCATGATGCTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATAACt                                                                                         <  1:580976/135‑1 (MQ=11)
                                      tAGCATGGTGCTAATCTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCTGTTCTTTTTATATAGAGCGTAAATACCCTCAATACCTTTTAAAGTATTCTTTGTTGTATTGATACTTTGAGACCTTGt                                                                                      <  1:71662/135‑1 (MQ=11)
                                                cTATTTTCGTGGCATGGAGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACt                                                                            >  1:31305/1‑135 (MQ=255)
                                                cTAATTTCGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACt                                                                            <  1:468150/135‑1 (MQ=255)
                                                  aaTTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCCTGTCTTTCTTACttt                                                                          >  2:69020/1‑135 (MQ=21)
                                                   aTTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTa                                                                         >  1:410125/1‑135 (MQ=21)
                                                     ttCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAat                                                                       >  1:538877/1‑135 (MQ=25)
                                                     ttCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAat                                                                       >  1:208060/1‑135 (MQ=21)
                                                      tCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAata                                                                      >  2:546386/1‑135 (MQ=21)
                                                       cGTGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTg                                                                                       >  2:28400/1‑117 (MQ=11)
                                                       cGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAatat                                                                     >  1:406233/1‑135 (MQ=25)
                                                        gTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTCACCAGAAAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGGCTTTCGTACTTTAATATg                                                                    >  1:202208/1‑135 (MQ=11)
                                                        gTGGCATGGCGAAAATCCGTAGAACTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATg                                                                    >  1:39969/1‑135 (MQ=21)
                                                         tGGCATGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTCGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAatctca                                                                   >  2:231152/1‑131 (MQ=11)
                                                         tGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATAATCTCATTACTTTTTTAAGTATGCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGa                                                                   <  2:345762/135‑1 (MQ=11)
                                                           gCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTTTTTCTTACTTTAATATGACg                                                                 <  1:479811/135‑1 (MQ=255)
                                                            cATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACgg                                                                <  1:571528/135‑1 (MQ=37)
                                                             aTGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACgtt                                                               >  2:103307/1‑133 (MQ=37)
                                                              tGGGGAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAAAATGAAGGTg                                                              >  2:132835/1‑135 (MQ=11)
                                                              tGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTg                                                              <  2:613960/135‑1 (MQ=255)
                                                              tGGCGAAAACCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTg                                                              <  1:555299/135‑1 (MQ=255)
                                                               ggggAAAATCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTATTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTCATATGACGGTgt                                                             >  2:360866/4‑134 (MQ=11)
                                                               ggCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGa                                                             <  1:218860/135‑1 (MQ=37)
                                                                gCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTTAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGAt                                                            <  2:269114/135‑1 (MQ=255)
                                                                gCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGAt                                                            >  2:393597/1‑135 (MQ=37)
                                                                    aaaTCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTAGTTTAATATGACGTTGATCTTg                                                        >  2:368453/1‑135 (MQ=255)
                                                                    aaaTCCGTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTg                                                        >  1:253474/1‑135 (MQ=255)
                                                                     aaTCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGc                                                       >  1:65828/1‑135 (MQ=255)
                                                                      aTCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGTGTAAATACACTCAATAACTTTTAAAGTATTCTTTGCTGTATTGTTACTTTGCTACCTTGTCTTTCTTACTTTAATATTGCGGTGCTGTTGCt                                                      >  2:209889/1‑135 (MQ=11)
                                                                      aTCCGTAGATCTGAACAGACCTTCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCt                                                      >  2:434899/1‑135 (MQ=255)
                                                                        ccGTTGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCa                                                    >  2:46652/1‑135 (MQ=255)
                                                                        ccGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCa                                                    >  1:101042/1‑135 (MQ=38)
                                                                        ccGTAGATCTGAAGAGACCTGCGGTTCATTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCa                                                    >  1:265336/1‑135 (MQ=255)
                                                                          gTAGATCTGAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAAt                                                  >  1:675817/1‑135 (MQ=255)
                                                                          atacaTCTTAATAGACCTGTGGTTCTTTTTATATAGAGCGTAAATCCACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAAt                                                  <  2:571385/131‑1 (MQ=14)
                                                                               tCTGACGAGCACTGCGGCTCTTTTTATATAGAGCGTAAGTACACTCAATACCTTTTAAATTATGTTTTGCTTTATTGTTACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGt                                             <  2:239935/135‑1 (MQ=14)
                                                                               tCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGt                                             >  1:421090/1‑135 (MQ=255)
                                                                               tCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTACTCAATGAGGt                                             >  2:166534/1‑135 (MQ=255)
                                                                               tCTGAAGAGACCTACGGTTCTTTTTATATAGAGCATAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTAATCTTGCTCAATAAGGt                                             >  1:165970/1‑135 (MQ=11)
                                                                                  gAAGAGACCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTAt                                          <  1:498979/135‑1 (MQ=255)
                                                                                  gAAGAGACCTACCGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTAt                                          <  2:446303/135‑1 (MQ=14)
                                                                                      tgaCCGGTGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAg                                      <  2:419668/134‑1 (MQ=255)
                                                                                      ataCCTGCGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAg                                      <  2:147389/133‑1 (MQ=39)
                                                                                      agaCCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAg                                      <  2:71916/135‑1 (MQ=255)
                                                                                      agaCCTGCGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAg                                      <  2:396581/135‑1 (MQ=255)
                                                                                          cTGCCGTTCTTTTTATACAGAGCTTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTTTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGaaat                                  <  1:152626/135‑1 (MQ=11)
                                                                                           tacGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATAtt                                 >  1:36791/3‑135 (MQ=255)
                                                                                           tacGGTTCGTTTTATATAGGGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATAtt                                 >  2:529032/3‑135 (MQ=255)
                                                                                            gCGGTTCTTTTTATATAAAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACAGTGATCTTCCTCACTGATGGTATTCAGCTAttt                                >  2:597220/1‑135 (MQ=11)
                                                                                            acGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATTTGGTTATTCAGATAttt                                <  1:302370/134‑1 (MQ=14)
                                                                                             tggTTCTTTTTATATAGATCGTAAATTCACTCAATACCTTTTTAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTTATCTTGCTCAATGAGGTTATTTAGATATTTc                               <  2:310333/134‑1 (MQ=11)
                                                                                             cGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTc                               <  1:64929/135‑1 (MQ=38)
                                                                                             cGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTc                               >  1:490157/1‑135 (MQ=255)
                                                                                              ggTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGATGGATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATTACGGTGATCTTTCTCAATGAGGTTATTCAGATGTTTCg                              >  1:143390/1‑135 (MQ=11)
                                                                                               gTTCTTTTTATATAGAGCGTAAATACATTCAATACATTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGa                             >  1:2472/1‑135 (MQ=255)
                                                                                               gTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGa                             <  1:625824/135‑1 (MQ=255)
                                                                                                  cTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATTAGGTTATTCAGATATTTCGATGt                          <  1:514695/135‑1 (MQ=255)
                                                                                                  cTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTCCTTCGGTTATTTCGATGt                          <  2:115654/135‑1 (MQ=14)
                                                                                                     tttATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGTGGTTATTTAGATATTTCGATGTACa                       <  1:336155/135‑1 (MQ=255)
                                                                                                      ttATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACaa                      >  2:85481/1‑135 (MQ=37)
                                                                                                      ttATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACaa                      <  1:548669/135‑1 (MQ=255)
                                                                                                      tgagttgtggCGTAAATACATTTAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTTCaa                      <  2:202298/126‑1 (MQ=14)
                                                                                                       tatatataGCTTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAAt                     <  2:501017/135‑1 (MQ=255)
                                                                                                       tatagaGAGAGTCAATACTCTCAATACCTTTTATAGTATTCTGTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAAt                     <  2:650371/135‑1 (MQ=14)
                                                                                                        atataGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATg                    <  2:333959/135‑1 (MQ=39)
                                                                                                         tataGAGTGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATgg                   <  2:674640/135‑2 (MQ=255)
                                                                                                           taGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACa                 <  1:436898/135‑1 (MQ=255)
                                                                                                             gggtgTAAATACCCTCAATACCTTTTAAAGTATTCTTTGCTGGATTGAGACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGt               <  2:621113/131‑1 (MQ=14)
                                                                                                              agCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATAACATGTCTTTCTTACTTTAATATGACGGTGATCTTACTCAATGAGGTTATTCAGATATTTCGATGTCAAATGGCAGTc              >  1:280497/1‑135 (MQ=14)
                                                                                                                 gTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAgg           >  1:592594/1‑135 (MQ=255)
                                                                                                                 gTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAgg           >  2:22238/1‑135 (MQ=255)
                                                                                                                     atcctttCAATCCCTTTTAAAGTATTCTTTGCCGTATAGCTACCTCCCCATTCTGACATTCGTACCTTAATACGACGGCGATCTTTCGCAGGGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGgttta       <  2:636735/130‑1 (MQ=9)
                                                                                                                     aTACATTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGgttta       <  1:454745/135‑1 (MQ=255)
                                                                                                                     aTACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCTTTGTATAATGGCAGTCAGgttta       <  1:382076/135‑1 (MQ=14)
                                                                                                                     aTACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGTTGTTCAATGGCAGTCAGgttta       <  1:323665/135‑1 (MQ=14)
                                                                                                                     aTACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGgttta       <  2:561217/135‑1 (MQ=255)
                                                                                                                      tatcttCAATATCTCTTAAAGTATTCTTTGCGGTATTGCTACTTTGATATCTTGTCTTTCTTACTTTAATATGACAGTGCTCGTACACAATGAGGTTATTCACATATTTCGTTGTACAATGACAGTCAGgtttaa      <  2:253787/131‑1 (MQ=255)
                                                                                                                        cATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGgtttaagt    >  1:294383/1‑135 (MQ=255)
                                                                                                                         aTTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGgtttaagtt   >  1:562054/1‑135 (MQ=255)
                                                                                                                          ttCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGgtttaagttt  >  2:320061/1‑135 (MQ=255)
                                                                                                                          ttCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGgtttaagttt  >  2:583774/1‑135 (MQ=255)
                                                                                                                          |                                                                                                                                      
AACCACTAATTTATCATGTCAGTGTTCGCTTAACTTGCTAGCATGATGCTAATTTCGTGGCATGGCGAAAATCCGTAGATCTGAAGAGACCTGCGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGGTTTAAGTTT  >  CP000730/35848‑36104

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: