Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP00073036,0870AG62.2% 689.6 / inf 876C155C (TGT→TGCtpnIS431mec transposase
Reads supporting (aligned to +/- strand):  ref base A (182/146);  new base G (284/255);  total (472/404)
Fisher's exact test for biased strand distribution p-value = 4.40e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.51e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 877 total aligned reads displayed.

TATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGGTTTAAGTTTAAAAGCTTTAATTACTTTAGCCATTGCTACCTTCGTTGAAGGTGCCTGATCTGTAATTACCTTTTGAGGTTTACCAAATTGTTTAATGAGACGTTTGATAAACGCATATGCTGAAT  >  CP000730/35953‑36220
                                                                                                                                      |                                                                                                                                     
   agagCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAg                                                                                                                                    <  1:197951/135‑1 (MQ=255)
   agagCGTAAATACACTCAATACCTTCTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTTGATGTACAATGGCAg                                                                                                                                    <  1:351275/135‑1 (MQ=255)
      gCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCa                                                                                                                                 <  1:575492/135‑1 (MQ=255)
      gCGTAAATACACTAAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCa                                                                                                                                 <  1:678610/135‑1 (MQ=255)
         tAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTCCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGGTATTGCGATGTACAATGGCGGTCAGgt                                                                                                                              >  2:323381/1‑135 (MQ=14)
          aaaTACATTCAAGACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGgtt                                                                                                                             <  2:100979/135‑1 (MQ=255)
            aTACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATTGCTTTTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGgttta                                                                                                                           <  1:409015/135‑1 (MQ=14)
            aTACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGTTGTTCAATGGCAGTCAGgttta                                                                                                                           <  1:323665/135‑1 (MQ=14)
             tACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGgtttaa                                                                                                                          >  1:431699/1‑135 (MQ=255)
              aCATTCAATACCTTTTAAAGTATTCTTTACCGTATTGATACTTTGATATCTTGTATTACTTACTTTAATATGACGATGATCTTACTCAATAAGGTTATTCAGATATTTCCATTTACAATGTCAGTCCGatttaat                                                                                                                         >  1:249787/1‑134 (MQ=14)
               cactCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTCCTTTAATATGACGGGGATCTTGCTCAATGAGGTTATTTAGATATTTCGATGTACAATGGCAGTCAGgtttaagt                                                                                                                        >  2:345717/4‑135 (MQ=14)
               cactCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGgtttaagt                                                                                                                        <  2:266259/132‑1 (MQ=255)
                aTTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGCCAGGCAGgcttaagtt                                                                                                                       >  2:666687/1‑135 (MQ=14)
                aTTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGgtttaagtt                                                                                                                       >  1:562054/1‑135 (MQ=255)
                  tCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTCCTTTAATATGACGGTGATCTTGCCCCATGAGGTTATTCCGATATTTCGCTGTACCCTCACACTCAGgcataagctta                                                                                                                     >  2:278905/1‑135 (MQ=11)
                  tCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAggtttaggttta                                                                                                                     >  2:524202/1‑135 (MQ=255)
                  tCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGgtttaagttta                                                                                                                     >  1:530899/1‑135 (MQ=255)
                  tCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGgtttaagttta                                                                                                                     >  2:508872/1‑135 (MQ=255)
                    aaTACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGGTTTAAGTTTaaa                                                                                                                   >  1:661445/1‑135 (MQ=255)
                     aTACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGTAGTCAGGTTTAAGTTTaaaa                                                                                                                  <  1:518320/135‑1 (MQ=255)
                       aCCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGGCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGc                                                                                                                <  2:127037/135‑1 (MQ=255)
                       aCCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGGTTTAAGTTTAAAAGc                                                                                                                >  1:642102/1‑135 (MQ=255)
                        ctgtttAGATTATTCTTTGCTGTATTGATAGTTGGATACCTTTTCTTTCTTACTTTAATATGACGTTGATCTTGCTAAATGAGGTTACTGAGACATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCt                                                                                                               <  2:590186/132‑1 (MQ=11)
                          ttttAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCttt                                                                                                             >  2:113572/1‑135 (MQ=255)
                           tttAAAGTATTCTTTGCGGGAAAGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCTTTa                                                                                                            >  1:274004/1‑135 (MQ=14)
                              aaaGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGGTTTAAGTTTAAAAGCTTTAAtt                                                                                                         >  2:651380/1‑135 (MQ=255)
                               aaGTATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGGTTTAAGTTTAAAAGCTTTAATTa                                                                                                        <  2:89266/135‑1 (MQ=255)
                                aGTAATCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTGACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGATTTAATTAc                                                                                                       >  2:372813/1‑135 (MQ=255)
                                  tATTCTTTGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGGTTTAAGTTTAAAAGCTTTAATTattt                                                                                                     >  2:190617/1‑132 (MQ=255)
                                       tttGCCGTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGGTTTAAGTTTAAAAGCTTTAATTATTTTAGcc                                                                                                >  2:158112/1‑135 (MQ=255)
                                        ttgatgttactaTACTTTGATTCCTGGTCTTTCTGATTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCTTTAATTACTTTAACCa                                                                                               <  1:447350/124‑1 (MQ=11)
                                           ccgTATTGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGGTTTAAGTTTAAAAGCTTTAATTATTTTAGCCATTg                                                                                            >  1:311479/3‑135 (MQ=255)
                                             gTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCTTTAATTACTTTAACCATTGCt                                                                                          >  1:389108/1‑135 (MQ=255)
                                                ttGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCTTTAATTACTTTAACCATTGCTAcc                                                                                       >  1:1164/1‑135 (MQ=255)
                                                 tGATACTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGGTTTAAGTTTAAAAGCTTTAATTATTTTGGCCATTGCTGCCt                                                                                      >  2:332411/1‑135 (MQ=255)
                                                   aTACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATAAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGGTTTAAGTTTAAAAGCTTTAATTACTTTGGCCATTGCTACCTTc                                                                                    >  1:543013/1‑135 (MQ=255)
                                                     aCTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTTAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGGTTTAAGTTTAAAAGCTTTAATTATTTTAGCCATTGCTGCCTTCGt                                                                                  <  2:382614/135‑1 (MQ=14)
                                                     aCTTTGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGGTTTAAGTTTAAAAGCTTTAATTATTTTAGCCATTGCTGCCTTCGt                                                                                  >  2:257852/1‑135 (MQ=255)
                                                     aCTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCTTTAATTACTTTAACCATTGCTACCTGCGt                                                                                  >  2:420988/1‑135 (MQ=255)
                                                       tttGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGGTTTAAGTTTAAAAGCTTTAATTATTTTAGCCATTGCTGCCTTCGTTg                                                                                >  2:451025/1‑135 (MQ=255)
                                                         tGATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTCATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCTTTAATTACTTTAACCATTGCTACCTTCGTTGaa                                                                              <  2:410125/135‑1 (MQ=11)
                                                          gATATCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGGTTTAAGTTTAAAAGCTTTAATTATTTTAGCCATTGCTGCCTTCGTTGAAg                                                                             >  2:74402/1‑135 (MQ=255)
                                                            tACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCTTTAATTTTTTTAACCATTGTTACCTTCGTTGAAGGt                                                                           <  1:26036/135‑1 (MQ=14)
                                                            tACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCTTTAATTACTTTAACCATTGCTACCTTCGTTGAAGGt                                                                           >  1:420918/1‑135 (MQ=255)
                                                             atcTTGTCTTTCTTACTTTAATATGACGATGAACTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGGTTTAAGTTTAAAAGCTTTAATTATTTTAGCCATTGCTGCCTTCGTTGAAGGTg                                                                          >  1:236874/3‑135 (MQ=14)
                                                             aCCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCTTTAATTACTTTAACCATTGCTACCTTCGTTGAAGGTg                                                                          >  1:334955/1‑135 (MQ=255)
                                                               cTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCTTTAATTACTTTAACCATTGCTACCTTCGTTGAAGGTGcc                                                                        >  1:291026/1‑135 (MQ=255)
                                                                 tGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCTTTAATTACTTTAACCATTGCTACCTTCGTTGAAGTGGCCTg                                                                      >  1:438642/1‑135 (MQ=255)
                                                                  gTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGGTTTAAGTTTAAAAGCTTTAATTATTTTAGCCATTGCTGCCTTCGTTGAAGGTGCCTGa                                                                     >  1:101060/1‑135 (MQ=255)
                                                                  gTCTTTCTTACTTTAATATGACGGTGATCTTGCTAAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCTTTAATTACTTTAACCATTGCTACCTTCGTTGAAGGTGCCTGa                                                                     >  1:358034/1‑135 (MQ=255)
                                                                   tctttcttACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCTTTAATTACTTTAACCATTGCTTCTTTCTTTGTAGGTGCCTGAt                                                                    <  1:282150/135‑1 (MQ=14)
                                                                   tctttcttACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCTTTAATTACTTTAACCATTGCTACCTTCGTTGAAGGTGCCTGAt                                                                    >  1:344936/1‑135 (MQ=255)
                                                                   tctttcttACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGGTTTAAGTTTAAAAGCTTTAATTATTTTAGCCCTTGCTTCCTTCGTTGACGGTGCCTGAt                                                                    <  2:390506/135‑1 (MQ=255)
                                                                    ctttcttACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGGTTTAAGTTTAAAAGCTTTAATTATTTTAGCCATTGCTGCCTTCGTTGAAGGTGCCTGATc                                                                   >  1:216987/1‑135 (MQ=255)
                                                                       tcttACTTTAATATGACGGTGATCTTGCTCAATGCGGTTATTCAGCTCTTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCGTTAATTATTTTAGCCATTGCTGCCTTCGTTGAAGGTGCCTGATCTGt                                                                >  2:170617/1‑135 (MQ=11)
                                                                        cttACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCTTTAATTACTTTAACCATTGCTTCCTTCGTTGAAGGTGCCTGATCTGTa                                                               <  1:77454/135‑1 (MQ=255)
                                                                        cttACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGGTTTAAGTTTAAAAGCTTTAATTATTTTAGCCATTGCTGCCTTCGTTGAAGGTGCCTGATCTGTa                                                               <  2:679606/135‑1 (MQ=255)
                                                                          tACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCCGATATTTCGATTTACAATGGCAGTCAGGTTTAAGTTTAAAAGCTTTAATTACTTTAACCATTGCTACCTTCGTTGAAGGTGCCTGATCTGTAAt                                                             <  1:612009/135‑1 (MQ=255)
                                                                             tttAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACACTGACAGTCAGGTTTAAGTTTAAAAGCTTTAATTATTTTAGCCATTGCAGCCTTCGTTGAAGGTGCCTGATCTGTAACTAc                                                          >  2:311762/1‑135 (MQ=11)
                                                                             tttAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCTTTAATTACTTTAACCATTGCTACCTTCGTTGAAGGTGCCTGATCTGTAATTAc                                                          <  1:636618/135‑1 (MQ=255)
                                                                              ttAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGGCAGGTTTAAGTTTAAAAGCTTTAATTACTTTAACCATTGCTACCTTCGTTCAAGGTGCCTGATCTGTAATTAcc                                                         <  1:376761/135‑1 (MQ=255)
                                                                                aaTATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCTTAAATTAGCTGATTGATTGCTACCTTTTGAGGAGGTGCCTGATCTGTAAGTCCCtt                                                       <  2:430326/135‑1 (MQ=11)
                                                                                 atatGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGGTTTAAGTTTAAAAGCTTTAATTATTTTAGCCATTGCTGCCTTCGTTGAAGGTGCCTGATCTGTAACTACCtct                                                      <  2:563332/135‑3 (MQ=255)
                                                                                   atGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGGTTTAAGTTTAAAAGCTTTAATTACTTTAGCCATTGCTACCTTCGTTGAAGGTGCCTGATCTGTAATTACCTTTTg                                                    >  2:538242/1‑135 (MQ=37)
                                                                                   atGACGGTGATCTAGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGTCAGTCAGGTTTAAGTTTAAAAGCTTTAATTACTTTAACCATTGCTACCTACGTTGAAGATGCCTGATCTGTAATTACCTTTTg                                                    >  2:625407/1‑135 (MQ=11)
                                                                                      aCGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCTTTAATTACTTTAACCATTGCTATCTTCGTTGATGGTGTCTGTTCTGTAATTACCTTTTGAgg                                                 <  1:167070/135‑1 (MQ=11)
                                                                                         gTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCTTTAATTACTTTAACCATTGCTACCTTCGTTGAAGGTGCCTGATCTGTAATTACCTTTTGAGGttt                                              <  2:481193/135‑1 (MQ=16)
                                                                                           gATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCTTTAATTACTTTAACCATTGCTACCTTCGTTGAAGGTGCCTGATCTGTAATTACCTTTTGCGGTTTAc                                            >  2:183078/1‑135 (MQ=16)
                                                                                             tCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCTTTAATTACTTTAACCATTGCTACCTTCGTTGAAGGTGCCTGATCTGTAATTACCTTTTGAGGTTTACCa                                          <  1:503551/135‑1 (MQ=12)
                                                                                             tCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGGTTTAAGTTTAAAAGCTTTAATTATTTTAGCCATTGATGCCTTCGTTGAAGGTGCCTGATCTGTAACTTTCTTTTGAGGCTTACCa                                          <  1:396609/135‑1 (MQ=11)
                                                                                             tCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGGGTTAAGTTTAAAAGCTTTAATTATTTTAGCCATTGCTGCCTTCGTTGAAGGTGCCTGATCTGTAACTACCTTTTGAGGCTTACCa                                          >  2:303635/1‑135 (MQ=11)
                                                                                                 gCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCTTTAATTACTTTAACCATTGCTACCTTCGTTGAAGGTGCCTGATCTGTAATTACCTTTTGAGGTTTACCAAAtt                                      <  1:69020/135‑1 (MQ=18)
                                                                                                 gCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCTTTAATTACTTTAACCATTGCTACCTTCGTTGAAGGTGCCTGATCTGTAATTACCTTTTGAGGTTTACCAAAtt                                      >  1:489603/1‑135 (MQ=12)
                                                                                                 gCTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCTTTAATTACTTTAACCATTGCTACCTTCGTTGAAGGTGCCTGATCTGTAATTACCTTTTGAGGTTTACCAAAtt                                      >  1:159145/1‑135 (MQ=12)
                                                                                                 gCTCAATGAGGTTACTCAGATATTTCGATGAACAATGACAGTCAGGTTTAAGTTTAAAAGCTTTAATTATTTTAGCCATTGCTGCCTTCGTTGAAGGTACCTGATCTGTAACTACCTTTTGACGCTTACCAAAtt                                      >  1:224708/1‑135 (MQ=11)
                                                                                                  cTCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCTTTAATTACTTTAACCATTGCTACCTTCGTTGAAGGTGCCTGATCTTTAATTACCTTTTGAGGTTTAACAAATTg                                     >  2:248957/1‑135 (MQ=255)
                                                                                                  cTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGGTTTAAGTTTAAAAGCTTTAATTATTTTAGCCATTGCTGCCTTCGTTGAAGGTGCCTGATCTGTAACTACCTTTTGAGGCTTACCAAATTg                                     >  1:592405/1‑135 (MQ=11)
                                                                                                   tCAATGGGGTTATTAACATATTTCGATGTACAATGACAGTCAGGTCTAAGTTTAAAAGCTTTAACTACCTTTGCGATTGCTACCTTCGTTGAAGGTGGCTGATCTGTAATTACCTTTGTAGATTTACCAAATTGt                                    >  2:212779/1‑135 (MQ=11)
                                                                                                   tCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCTTTAATTACTTTAACCATTGCTACCTTCGTTGAAGGTGCCTGATCTGTAATTACCTTTTGAGGTTTACCAAATTGt                                    >  2:398761/1‑135 (MQ=18)
                                                                                                   tCAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCTTTAATTACTTTAACCATTGCTACCTTCGTTGAAGGTGCCTGATCTGTAATTACCTTTTGAGGTTTACCAAATTGt                                    <  1:478169/135‑1 (MQ=16)
                                                                                                   tCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGGTTTAAGTTTAAAAGCTTTAATTATTTTAGCCATTGCTGCCTTCGTTGAAGGTGCCTGATCTGTAACTACCTTTTGAGGCTTACCAAATTGt                                    >  2:355800/1‑135 (MQ=11)
                                                                                                    cAATGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCTTTAATTACTTTAACCATTGCTACCTTCGTTGAAGGTGCCTGATCTGTAATTACCTTTTGAGGTTTACCAAATTGtt                                   >  2:474969/1‑135 (MQ=16)
                                                                                                     aactaGGTTACTCAGATATTTCGCTGTACAATGGCAGTCAGGTTCAAGTTTAAAAGCTTTAATTACTTTAACCATTGCTACCTTCGTTGAAGGTGTCTGATCTGTAATTACCTTTTGAGGTTTACCAAATTGttt                                  <  1:189572/131‑1 (MQ=11)
                                                                                                     aaTGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGGTTTAAGTTTAAAAGCTTTAATTATTTTAGCCATTGCTGCCTTCGTTGAAGGTGCCTGATCTGTAACTACCTTTTGAGGCTTACCAAATTGttt                                  <  2:605731/135‑1 (MQ=11)
                                                                                                      aTGAGGTTATTCATATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCTTTAATTACTTTAACCATTGCTACCTTCGTTGAAGGTGCCTGATCTGTAATTACCTTTTGAGGTTTACCAAATTGTTTa                                 <  2:612787/135‑1 (MQ=12)
                                                                                                      aTGAGGTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCTTTAATTACTTTAACCATTGCTACCTTCGTTGAAGGTGCCTGATCTGTAATTACCTTTTGAGGTTTACCAAATGGTTTa                                 >  2:290411/1‑135 (MQ=16)
                                                                                                           gTTATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCTTTAATTACTTTAACCATTGCTACCTTCGTTGAAGGTGCCTGATCTGTAATTACCTTTTGAGGTTTACCAAATTGTTTAATgag                            <  2:440599/135‑1 (MQ=12)
                                                                                                            ttATTCCGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCTTTAATTACTTTAACCATTGCTACCTTCGTTGAAGGTGCCTGATCTGTAATTACCTTTTGAGGTTTACCAAATTGTTTAATgaga                           <  1:62137/135‑1 (MQ=12)
                                                                                                            ttATTCAGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCTTTAATTACTTTAACCATTGCTACCTTCGTTGAAGGTGCCTGATCTGTAATTACCTTTTGAGGTTTACCAAATTGTTTAATgaga                           <  2:557637/135‑1 (MQ=16)
                                                                                                             tATTCAGATATTTCGATGTACAGTGGCAGTCAGGTTTAGGTTTAAAAGCTTTAATTACTTTAACCATTGCTACCTTCGTTGAAGGTGCCTGATCTGTAATTACCTTTTGAGGTTTACCAAATTGTTTAATGAGAc                          <  2:58029/135‑1 (MQ=255)
                                                                                                              aTTCAGTTATTTCTATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCTTTAATTACTTTATCCATTGCTACCTTCGTTGAAGGTGCCTGATCTGTAATTACCTTTTGAGGTTTACCAAATTGTTTAATGAGACg                         <  2:545203/135‑1 (MQ=255)
                                                                                                                  aGATATTTCGATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCTTTAATTACTTTAACCATTGCTACCTTCGTTGAAGGTGCCTGATCTGTAATTACCTTTTGTGGTTTATCAATTTGTTTAATGAGACGTTTg                     <  1:366482/135‑1 (MQ=11)
                                                                                                                           gATGTACAATGGCAGTCAGGTTTAAGTTTAAAAGCTTTAATTACTTTAACCATTGCTACCTTCGTTGAAGGTGCCTGATCTGTAATTACCTTTTGAGGTTTACCAAATTGTTTAATGAGACGTTTGATAAACGCa            <  2:6404/135‑1 (MQ=17)
                                                                                                                             tGTACAATGGCATTCAGGTTTAAGTTTAAAAGCTTTAATTACTTTAACCATTGCTACCTTCGTTGAAGGTGCATGATCTGTAATTACCTTTTGAGGTTTACCAAATTGTTTAATGAGACGTTTGATAAACGCata          <  2:143433/135‑1 (MQ=255)
                                                                                                                             tGTACAATGGAAGTCAGGTTTAAGTTTAAAAGCTTTAATTACTTTAACCATTGCTACCTTCGTTGAAGGTGCCTGATCTGTAATTACCTTTTGAGGTTTACCAAATTGTTTAATGAGACGTTTGATAAACGCata          >  1:470790/1‑135 (MQ=12)
                                                                                                                               tACAATGACAGTCAGGTTTAAGTTTAAAAGCTTTAATTATTTTAGCCATTGCTGCGTTCAGAAAATGTGCCTGATCTGTAACTACCTTTTGAGGCTTACCAATTTGTTTAATGAGACGTTTGATAAACGCATATg        <  1:126395/135‑1 (MQ=11)
                                                                                                                                aCAATGGCAGTCAGGTTTAAGTTTAAAAGCTTTAATTACTTTAACCATTGCTACCTTCGTTGAAGGTGCCTGATCTGTAATTACCTTTTGAGGTTTACCAAATTGTTTAATGAGACGTTTGATAAACGCATATGc       >  2:229377/1‑135 (MQ=18)
                                                                                                                                aCAATGACAGTCAGGTTTAAGTTTAGAAGCTTTAATTATTTTAGCCATTGCTGCCTTCGTTGAAGGTGCCTGATCTGTAACTACCTTTTGAGGCTTACCAAATTGTTTAATGAGACGTTTGATAAACGCCTATGc       <  1:458809/135‑1 (MQ=11)
                                                                                                                                aCAATGACAGTCAGGTTTAAGTTTAAAAGCTTTAATTATTTTAGCCATTGCTGCCTTCGTTGAAGGTGCCTGATCTGTAACTACCTTTTGAGGCTTACCAAATTGTTTAATGAGACGTTTGATAAACGCATATGc       >  2:659570/1‑135 (MQ=11)
                                                                                                                                    tGACAGTCAGGTTTAAGTTTAAAAGCTTTAATTATTTTAGCCATTGCTGCCTTCGTTGAAGGTGCCTGATCTGTAACTACCTTTTGAGGCTTACCAAATTGTTTTATGAGACGTTTGATAAACGCATATGCTGaa   <  1:143951/135‑1 (MQ=11)
                                                                                                                                      |                                                                                                                                     
TATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTAATATGACGGTGATCTTGCTCAATGAGGTTATTCAGATATTTCGATGTACAATGACAGTCAGGTTTAAGTTTAAAAGCTTTAATTACTTTAGCCATTGCTACCTTCGTTGAAGGTGCCTGATCTGTAATTACCTTTTGAGGTTTACCAAATTGTTTAATGAGACGTTTGATAAACGCATATGCTGAAT  >  CP000730/35953‑36220

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: