| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 36,315 | 0 | G | A | 61.9% | 388.2 / inf | 788 | Y79Y (TAC→TAT) | tpn | IS431mec transposase |
| Reads supporting (aligned to +/- strand): ref base G (158/137); new base A (242/238); total (405/383) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.16e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 793 total aligned reads displayed.
AATTGTTTAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAA > CP000730/36181‑36449 | aTTGTTTAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGt > 1:619529/1‑135 (MQ=32) gTTTAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACg < 2:352233/135‑1 (MQ=33) tttAATGAGACGTTTGATAAACGCATATGCTGCATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCTCGATATAAATAGTTCTATTTTTCTTTTATTTTGATGTACGt < 1:406185/135‑1 (MQ=11) tttAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGTACGATATAAATAGTTCCATTTTCCTTTTATTTTGATGTACGt < 1:113572/135‑1 (MQ=17) ttAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGtc < 2:5041/135‑1 (MQ=17) ttAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCATTTATTTTGATATACggc < 1:642463/135‑3 (MQ=255) aTGAGACGTTTGTTAAACTCATATGCTGAATTATTTTCTCGTTGCTTACGCAACCAAATTTCTAATGTATGTCCCTCTGTATCAATTGCTCGATATATATAGCTTCATTTTCCTTTTATTTTTATATACGTCtca < 2:147483/135‑1 (MQ=11) gagaCGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCtcatc < 2:16379/135‑1 (MQ=12) gagaCGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCtcatc > 2:540904/1‑135 (MQ=32) agaCGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCtcatca > 1:8159/1‑135 (MQ=17) gaCGTTTGATAAAAGCATATGCTGAATGATTATCTAGTTGCTTACGCAACCAACTATCTAATGTATGTCCCTCTGCATCAATGGCACGATATGAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCtcatcac > 2:33982/1‑134 (MQ=255) gaCGTTTCATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCaa < 2:364664/135‑1 (MQ=12) aCGTTCTATAAACGCATATGCTGAATGAATATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCGCATCAAt < 1:417957/135‑1 (MQ=255) tgctAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGcc > 1:351919/4‑135 (MQ=18) tGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGcc > 2:476130/1‑135 (MQ=12) tGATAAACGCATATGCTGAATAATTATCTCATTACTTACGAAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTAATATACGTCTCATCAATACGcc > 1:230307/1‑135 (MQ=11) aTAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCAt > 1:500271/1‑135 (MQ=16) aCGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGt > 2:174014/1‑135 (MQ=17) aCGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGACCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCCTTCGt > 2:427965/1‑135 (MQ=11) gCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGtaa > 2:76271/1‑135 (MQ=33) cATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATTCGTTTCATCAATACGCCATTTGtaat < 1:393893/135‑1 (MQ=255) tGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCttt < 2:43863/135‑1 (MQ=255) tGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCttt < 1:584058/135‑1 (MQ=35) aaTGATTTTCCTGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCttttt < 2:274004/135‑1 (MQ=11) aaTGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGTCATTTGTAATAAGCttttt < 1:542238/135‑1 (MQ=25) aTGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCtttttt < 1:478291/135‑1 (MQ=25) aTGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCtttttt > 2:585918/1‑135 (MQ=35) aTGATTATCTCGTGGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCtttttt < 2:68625/135‑1 (MQ=25) tGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATACGCTTTTTTa > 1:52757/1‑135 (MQ=255) aTTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATg < 1:369807/135‑1 (MQ=255) tATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATTTTTTCGCCATTTGTAATAAGCTTTTTTATGCt < 1:571457/135‑1 (MQ=255) tctcGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCttt > 2:570321/1‑135 (MQ=255) tctcGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGAACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCttt > 2:636226/1‑135 (MQ=255) cctcGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCttt < 2:533718/134‑1 (MQ=255) ctcGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCtttt < 2:263459/135‑1 (MQ=255) ctcGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTCAGTGGAGGGACGTCTCATCAATACGCCATTTGTCATAAACTTTTTTATGCtttt > 1:95212/1‑135 (MQ=14) tcGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCttttt > 2:245705/1‑135 (MQ=255) cGTTGCTTACGCAACCAAATATCTGATGTATGTCCCTCTGTCTCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACTTCTCATCAATACGCCCTTTGTAATAAGCCTTTTTATGCTTTttc > 2:131970/1‑135 (MQ=11) cGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCCTTTGTAATAAGCTTTTTTATGCTTTttc > 2:579217/1‑135 (MQ=255) gTTGCTTACGCAACCAAATATCTATTTCATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGTTTTttct > 2:390427/1‑135 (MQ=14) gTTGCTTACGCAACCAAATATCTAATGTATGGCACTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTACTTTGATGTACGTCTCATCAATACGCCATTTGTCATACGCGTTTTTATGCTTTttct > 2:384177/1‑135 (MQ=11) tGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTttcttc > 1:159956/1‑135 (MQ=40) cTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATCCGCCATTGGTCCTCAGCTTTTTTATGCTTTttcttcta > 2:106505/1‑133 (MQ=11) ttACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATGTAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCCTTTGTAATAAACTTTTTTATGCTTTTTTCTCCag > 2:194055/1‑134 (MQ=14) aCCAAATATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGAt > 2:215541/1‑135 (MQ=255) aaaTATCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCTAAATTTGATata > 2:659797/1‑133 (MQ=255) atatCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATaaa < 2:316932/135‑1 (MQ=37) atCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAAt < 2:673690/135‑1 (MQ=255) atCTAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAAt < 1:663521/135‑1 (MQ=255) tCTAATGTATGTCCCTCTGCATCAATGGCACGATATAGATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCCTTTGTAATAAGCTTTTTTATGCTTTTTCTTCCACGTTTGATATAAAAtt < 1:379216/135‑1 (MQ=11) tAATGTATGTCCCTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTgg > 1:635362/1‑135 (MQ=255) aaTGTATGTCACTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTggg < 2:291026/135‑1 (MQ=255) acggcccTCTGTATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTCGTATAAAATTGGGGCatg > 2:46338/5‑134 (MQ=11) tgtCCCTCTGTATCAATGTCACGATATAAATAGAACCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTATAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTAGTATAAAATTGGGGCatat > 1:128499/1‑135 (MQ=11) cccTCTGTATCAATGGCACGATAGAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCt < 1:73143/135‑1 (MQ=255) ctgtaTCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTTCTATAAAATTGGGGCATTTTCTTTaa > 2:154691/5‑135 (MQ=11) gCATCAATGGCTCGCTTTAAATAGCTCCCTTTTCCATCTGTTTTACATTAAGTCTCCACTATACGGCATCTGTATTATGTTGTAGGAAGGTTTTTCTGTTAAAGTTGATATAAAATTGGGGCATATTCTTGAAcc < 2:458092/135‑1 (MQ=2) gCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATCTAAAATTGGGGCACATTCTTGAccc > 2:203772/1‑135 (MQ=255) taTCAATTGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCTATTTTGATATAAAATTGGGGCATATTCTTGAAccc < 1:205615/134‑1 (MQ=11) taTCAATGGCACGATATAAATAGCTCTATTTTTCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAAccc < 1:248957/134‑1 (MQ=11) taTCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGCTACGCGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATTCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAAccc < 1:23814/134‑1 (MQ=11) taTCAATGGCACGATAGAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATGTGTAATAAGCTTTTTTATGCTTTTTCTTCCACATTTAATTTGAAATGGGGGAATATTCTGGAAcca > 2:597435/2‑134 (MQ=11) aTCCATGGCTCGATCTAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATTAAATTGGGGCATATTCTTGAACCCa < 1:281108/135‑1 (MQ=11) aTCAATGGCACGATATAAATAGCTTCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGTTTTTTCTTCCAAATTTGATATATAATTGGGGCATATTCTTGAACCCa < 1:21831/135‑1 (MQ=11) aTCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAAcaca > 2:524848/1‑135 (MQ=25) tCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAAACCaa > 1:653252/1‑135 (MQ=255) aaTGGCACGACATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACg > 1:469979/1‑135 (MQ=255) agtgCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACgg < 2:302385/132‑1 (MQ=255) aTGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATACTTGTTCTTCCAAATTTGATATAAAAGTGGGGCTTATTCTTGAACCCaaaga > 1:265533/1‑132 (MQ=11) ggCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTa < 1:675152/135‑1 (MQ=19) cACGATATAAATAGCTCCATTTTCCTTTTATTTTGATATACGTCTCATGCGTGCGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTTTTGAACCCAACGGAAGa < 1:293568/135‑1 (MQ=11) cACGATATAAATAACTCCATATTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAAATTGATATAAAATTGGGGCATATTNTTGAACCCAACGGTanc > 1:555350/1‑133 (MQ=11) cGATATAAATAGCTCCATTTTCCTTTTATTTTAATATACAACTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGatc > 1:168466/1‑133 (MQ=11) ataAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTTTTTTTTTTCTTCCAAATTTGATATAAAATTGTGGCGTATTCTTGAACCCAACGGTAGACCGttt > 2:331498/1‑134 (MQ=11) aaTAGCTCCATTTTCCTTTTATTTTAATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAat > 1:36049/1‑135 (MQ=11) agaGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGTGCATATTTTTGATCCCAACGGTAGATCGTTGAatg < 1:103270/133‑1 (MQ=11) aGCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAatgat < 2:228487/135‑1 (MQ=255) gCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGCTATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAatgatg < 2:282688/135‑1 (MQ=25) gCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAatgatg < 1:455016/135‑1 (MQ=255) gCTCCATTTTCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATCCTTGAACCCACCGGAACACCGTTGAaggaga > 2:495129/1‑133 (MQ=11) tctaTTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGCAATAAGCTTTTTTATGCTTTTTCTTCCAAATTCGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGaa < 2:399141/132‑1 (MQ=11) ccATTTTCCTTTTATTCTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCATCGGTAGACCGTTGAATGATGAAc < 1:446415/135‑1 (MQ=255) tttCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACTGTAGATCGTTGAATGATGAACGttt < 1:287/135‑1 (MQ=255) tttCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGttt < 1:438417/135‑1 (MQ=255) ttCCTTTTATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTa > 2:611447/1‑135 (MQ=255) tttATTTTGATGTACGTCTCATAAATACGCCATATGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAACATTGGGTCATGGTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTAcacca > 1:5926/1‑135 (MQ=14) tttATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTAcaccc > 1:385588/1‑134 (MQ=255) ttATTTTGATGTACGACTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGACCGTTTAcaccac > 1:333110/1‑135 (MQ=255) ttATTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTAcaccac > 1:515122/1‑135 (MQ=255) tATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACg > 2:55593/1‑135 (MQ=21) tATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCATTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACg > 1:187660/1‑135 (MQ=38) tATTTTGATATACGTTTCATCAATACGCCCTTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACg < 2:379121/135‑1 (MQ=11) aTTTTGATGTACGTCTCATCAATACACCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGt > 1:145251/1‑135 (MQ=25) aTTTTGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGt > 1:324832/1‑135 (MQ=255) aTTTTGATATACGTATCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAAGGTTTACACCACGt > 2:116376/1‑135 (MQ=11) ttttGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCTCGtt < 2:644863/135‑1 (MQ=255) ttttGATATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAACGTTTACACCACGtt < 1:60282/135‑1 (MQ=255) ttttGAGATACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTGTCTTCCAAATTTGATATAAAATTGGGGCATATTCTTGAACCCAACGGTAGATCGTTGAATGATGAAGGTTTACACCACGtg < 1:313593/135‑2 (MQ=11) tttGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGTGCATATTGTTTAAGCCACCGCTAGACCGTTGAATGATGAACCTTTAAACCACGTTc > 2:92632/1‑135 (MQ=14) tGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCAGATTCTGAAACCCAACGGTAGGCTCGTGAATCAGGAACTTTTacagaccgtcccc > 2:241654/1‑125 (MQ=14) | AATTGTTTAATGAGACGTTTGATAAACGCATATGCTGAATGATTATCTCGTTGCTTACGCAACCAAATATCTAATGTATGTCCCTCTGCATCAATGGCACGATATAAATAGCTCCATTTTCCTTTTATTTTGATGTACGTCTCATCAATACGCCATTTGTAATAAGCTTTTTTATGCTTTTTCTTCCAAATTTGATACAAAATTGGGGCATATTCTTGAACCCAACGGTAGACCGTTGAATGATGAACGTTTACACCACGTTCCCTTAA > CP000730/36181‑36449 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |